miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7822 3' -57.2 NC_001973.1 + 109188 0.67 0.816139
Target:  5'- -cGCcGAGCGCGCCGcGCaGCCGGc- -3'
miRNA:   3'- uuUGaCUCGCGCGGCcUGcUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 135895 0.67 0.816139
Target:  5'- aGAGCggcgGucGCGgGCCGGACGAUCGu-- -3'
miRNA:   3'- -UUUGa---Cu-CGCgCGGCCUGCUGGCuac -5'
7822 3' -57.2 NC_001973.1 + 94531 0.67 0.807456
Target:  5'- -cGCccGGCGCGCCGGucauCGACUGGg- -3'
miRNA:   3'- uuUGacUCGCGCGGCCu---GCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 40605 0.67 0.807456
Target:  5'- uGGCgGAGCGCGCCGc-CGACCa--- -3'
miRNA:   3'- uUUGaCUCGCGCGGCcuGCUGGcuac -5'
7822 3' -57.2 NC_001973.1 + 39400 0.67 0.807456
Target:  5'- cGACgGcGCGCGCCaGGuCGGCCGcgGu -3'
miRNA:   3'- uUUGaCuCGCGCGG-CCuGCUGGCuaC- -5'
7822 3' -57.2 NC_001973.1 + 124203 0.67 0.798616
Target:  5'- -cGCggcGGCGCGCCGGcucgUGACCGAc- -3'
miRNA:   3'- uuUGac-UCGCGCGGCCu---GCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 108258 0.68 0.789628
Target:  5'- cGGCUGccGGCGCGCgGaGACGgACCGGc- -3'
miRNA:   3'- uUUGAC--UCGCGCGgC-CUGC-UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 7709 0.68 0.788721
Target:  5'- gAAAC-GAGCGCGCCGcccgcccgacuGACGcuggagcACCGGUGc -3'
miRNA:   3'- -UUUGaCUCGCGCGGC-----------CUGC-------UGGCUAC- -5'
7822 3' -57.2 NC_001973.1 + 41954 0.68 0.7805
Target:  5'- gAAACUGGacGCGUuucGCCuGACGGCCGAc- -3'
miRNA:   3'- -UUUGACU--CGCG---CGGcCUGCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 109141 0.69 0.703505
Target:  5'- --cUUGGGCGCcgccucgacgaGCCGGGCGAgCCGGUc -3'
miRNA:   3'- uuuGACUCGCG-----------CGGCCUGCU-GGCUAc -5'
7822 3' -57.2 NC_001973.1 + 48560 0.69 0.693519
Target:  5'- uGAAUUGcGGcCGCGCCGacGACGACCaGAUGc -3'
miRNA:   3'- -UUUGAC-UC-GCGCGGC--CUGCUGG-CUAC- -5'
7822 3' -57.2 NC_001973.1 + 120634 0.69 0.683483
Target:  5'- uGGAC-GAGCGCGCCGG-CGA-CGAg- -3'
miRNA:   3'- -UUUGaCUCGCGCGGCCuGCUgGCUac -5'
7822 3' -57.2 NC_001973.1 + 7861 0.7 0.660255
Target:  5'- cGAGCUG-GCGCGCCaGGGCGcguuuugcaacgccGCCGGc- -3'
miRNA:   3'- -UUUGACuCGCGCGG-CCUGC--------------UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 6506 0.7 0.622683
Target:  5'- cGGCUGGGCG-GCgCGGGCGuGCCGAc- -3'
miRNA:   3'- uUUGACUCGCgCG-GCCUGC-UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 61192 0.7 0.622683
Target:  5'- -cGCUGAacGCGCGCuCGGGCGggcGCCGGc- -3'
miRNA:   3'- uuUGACU--CGCGCG-GCCUGC---UGGCUac -5'
7822 3' -57.2 NC_001973.1 + 107545 0.71 0.612528
Target:  5'- gGGGCUucGGGCGCGCCG-ACGACCcGAg- -3'
miRNA:   3'- -UUUGA--CUCGCGCGGCcUGCUGG-CUac -5'
7822 3' -57.2 NC_001973.1 + 55847 0.71 0.572126
Target:  5'- aGGGC-GAGCGCGCCcgcaacGGCGGCCGAa- -3'
miRNA:   3'- -UUUGaCUCGCGCGGc-----CUGCUGGCUac -5'
7822 3' -57.2 NC_001973.1 + 28416 0.73 0.48421
Target:  5'- ---gUGAGCGCGCUuGGCGGCCGcgGc -3'
miRNA:   3'- uuugACUCGCGCGGcCUGCUGGCuaC- -5'
7822 3' -57.2 NC_001973.1 + 53579 0.73 0.474821
Target:  5'- cGACUGAggcGCGCGCCGG-CG-CCGAg- -3'
miRNA:   3'- uUUGACU---CGCGCGGCCuGCuGGCUac -5'
7822 3' -57.2 NC_001973.1 + 152371 0.77 0.282415
Target:  5'- ---aUGAGCGaGCCGGACGGCCGGc- -3'
miRNA:   3'- uuugACUCGCgCGGCCUGCUGGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.