miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7822 5' -58.2 NC_001973.1 + 1354 0.69 0.704078
Target:  5'- -cUGUAucAAGCCUaccaGCGCGCGuCCGGCg -3'
miRNA:   3'- ccGCAU--UUUGGGg---UGCGCGC-GGCCGg -5'
7822 5' -58.2 NC_001973.1 + 1808 0.75 0.36919
Target:  5'- cGCGUAcugguCCCCGCcgaGCGCGCacaCGGCCa -3'
miRNA:   3'- cCGCAUuuu--GGGGUG---CGCGCG---GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 2157 0.67 0.797095
Target:  5'- aGGCuUGAAGCUCCACG-GCGUaaGGCa -3'
miRNA:   3'- -CCGcAUUUUGGGGUGCgCGCGg-CCGg -5'
7822 5' -58.2 NC_001973.1 + 2520 0.67 0.797095
Target:  5'- cGGCGUucAugUCC-UGCGCGaacucgaccUCGGCCa -3'
miRNA:   3'- -CCGCAuuUugGGGuGCGCGC---------GGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 2696 0.75 0.385108
Target:  5'- cGCGUAAAAUCUUACGCGU--CGGCCg -3'
miRNA:   3'- cCGCAUUUUGGGGUGCGCGcgGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 2814 0.7 0.644978
Target:  5'- cGCGUAGGAUuuUACGCGU--CGGCCg -3'
miRNA:   3'- cCGCAUUUUGggGUGCGCGcgGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 3486 0.7 0.615194
Target:  5'- cGGUc---AGCUCCACGCgGCGCUuGGCCa -3'
miRNA:   3'- -CCGcauuUUGGGGUGCG-CGCGG-CCGG- -5'
7822 5' -58.2 NC_001973.1 + 3569 0.67 0.814277
Target:  5'- gGGCGcgcgauGACCgaCgGCGCGCGCuuCGGCUc -3'
miRNA:   3'- -CCGCauu---UUGG--GgUGCGCGCG--GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 3761 0.75 0.36919
Target:  5'- uGCGaaccGAACCgCGCGCGCGCCccguccacGGCCg -3'
miRNA:   3'- cCGCau--UUUGGgGUGCGCGCGG--------CCGG- -5'
7822 5' -58.2 NC_001973.1 + 4576 0.66 0.838865
Target:  5'- uGGcCGUAGAacgcgauuccgGCCCCGCugccCGCGUCcGCCu -3'
miRNA:   3'- -CC-GCAUUU-----------UGGGGUGc---GCGCGGcCGG- -5'
7822 5' -58.2 NC_001973.1 + 4634 0.68 0.750891
Target:  5'- uGGCGUAc-ACCCUgucggcgGCGgGCGCCgucGGCg -3'
miRNA:   3'- -CCGCAUuuUGGGG-------UGCgCGCGG---CCGg -5'
7822 5' -58.2 NC_001973.1 + 4931 0.67 0.830836
Target:  5'- cGGCGg---GCUCguCGC-CGaCCGGCCg -3'
miRNA:   3'- -CCGCauuuUGGGguGCGcGC-GGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 5761 0.66 0.854384
Target:  5'- cGGCccacGGCgCUACGCGCGUC-GCCg -3'
miRNA:   3'- -CCGcauuUUGgGGUGCGCGCGGcCGG- -5'
7822 5' -58.2 NC_001973.1 + 5921 0.66 0.83807
Target:  5'- cGCGUc--GCCCgCGguCGCGCGCacgaugcgcgacgCGGCCg -3'
miRNA:   3'- cCGCAuuuUGGG-GU--GCGCGCG-------------GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 6420 0.66 0.846716
Target:  5'- cGGCGgcGGcGCgCCGacgaGCGCGCCcgucGCCg -3'
miRNA:   3'- -CCGCauUU-UGgGGUg---CGCGCGGc---CGG- -5'
7822 5' -58.2 NC_001973.1 + 6716 0.66 0.869145
Target:  5'- -----uGAAUCCCGCGcCGuCGuuGGCCg -3'
miRNA:   3'- ccgcauUUUGGGGUGC-GC-GCggCCGG- -5'
7822 5' -58.2 NC_001973.1 + 7265 0.67 0.814277
Target:  5'- aGCGg---GCUCgGCGCGCGgCGcGCCc -3'
miRNA:   3'- cCGCauuuUGGGgUGCGCGCgGC-CGG- -5'
7822 5' -58.2 NC_001973.1 + 7846 0.67 0.797095
Target:  5'- cGGCGccgcGCCCgucgagCugGCGCGCCagGGCg -3'
miRNA:   3'- -CCGCauuuUGGG------GugCGCGCGG--CCGg -5'
7822 5' -58.2 NC_001973.1 + 7945 0.7 0.644978
Target:  5'- cGGCGUGGugcacGCgCCCGCGUGCGCguaCGcGCg -3'
miRNA:   3'- -CCGCAUUu----UG-GGGUGCGCGCG---GC-CGg -5'
7822 5' -58.2 NC_001973.1 + 9092 0.69 0.694323
Target:  5'- cGCGUGA-GCUCgGCGCGCauCCGcGCCg -3'
miRNA:   3'- cCGCAUUuUGGGgUGCGCGc-GGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.