miRNA display CGI


Results 21 - 40 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7822 5' -58.2 NC_001973.1 + 20976 0.66 0.846716
Target:  5'- cGCGUAGGAUuuUACGCGU--CGGCUa -3'
miRNA:   3'- cCGCAUUUUGggGUGCGCGcgGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 24129 0.66 0.846716
Target:  5'- gGGCG---AGCUCgCggguGCGCGCGCCGcccGCCu -3'
miRNA:   3'- -CCGCauuUUGGG-G----UGCGCGCGGC---CGG- -5'
7822 5' -58.2 NC_001973.1 + 89444 0.66 0.846716
Target:  5'- cGGCGcgcacGGACCCCuCGCGgcucaCGUCGGgCg -3'
miRNA:   3'- -CCGCau---UUUGGGGuGCGC-----GCGGCCgG- -5'
7822 5' -58.2 NC_001973.1 + 130887 0.66 0.846716
Target:  5'- cGCGUAGGAUuuUACGCGU--CGGCUa -3'
miRNA:   3'- cCGCAUUUUGggGUGCGCGcgGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 146789 0.66 0.846716
Target:  5'- uGGUGgcGAgcacgccuuccACCCCGCcggGCGUGCgGGUg -3'
miRNA:   3'- -CCGCauUU-----------UGGGGUG---CGCGCGgCCGg -5'
7822 5' -58.2 NC_001973.1 + 6420 0.66 0.846716
Target:  5'- cGGCGgcGGcGCgCCGacgaGCGCGCCcgucGCCg -3'
miRNA:   3'- -CCGCauUU-UGgGGUg---CGCGCGGc---CGG- -5'
7822 5' -58.2 NC_001973.1 + 23674 0.66 0.846716
Target:  5'- cGGUGcucgcGGGCCUC-CGCGCGUCGacgcGCCa -3'
miRNA:   3'- -CCGCau---UUUGGGGuGCGCGCGGC----CGG- -5'
7822 5' -58.2 NC_001973.1 + 29765 0.66 0.846716
Target:  5'- uGCGaGAcGCUCCA-G-GCGCUGGCCg -3'
miRNA:   3'- cCGCaUUuUGGGGUgCgCGCGGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 118547 0.66 0.846716
Target:  5'- aGCG-AAGucuacGCCCUgACGCGCGa-GGCCa -3'
miRNA:   3'- cCGCaUUU-----UGGGG-UGCGCGCggCCGG- -5'
7822 5' -58.2 NC_001973.1 + 4576 0.66 0.838865
Target:  5'- uGGcCGUAGAacgcgauuccgGCCCCGCugccCGCGUCcGCCu -3'
miRNA:   3'- -CC-GCAUUU-----------UGGGGUGc---GCGCGGcCGG- -5'
7822 5' -58.2 NC_001973.1 + 93590 0.66 0.838865
Target:  5'- cGCGUA-GugCCCGCGCugGCGgacaGGCCc -3'
miRNA:   3'- cCGCAUuUugGGGUGCG--CGCgg--CCGG- -5'
7822 5' -58.2 NC_001973.1 + 38421 0.66 0.838865
Target:  5'- cGGCG-AAGGCgauuuCgUugGCGCGCaccgCGGCCg -3'
miRNA:   3'- -CCGCaUUUUG-----GgGugCGCGCG----GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 53567 0.66 0.838865
Target:  5'- cGGCc---AugUCUgcgacugagGCGCGCGCCGGCg -3'
miRNA:   3'- -CCGcauuUugGGG---------UGCGCGCGGCCGg -5'
7822 5' -58.2 NC_001973.1 + 5921 0.66 0.83807
Target:  5'- cGCGUc--GCCCgCGguCGCGCGCacgaugcgcgacgCGGCCg -3'
miRNA:   3'- cCGCAuuuUGGG-GU--GCGCGCG-------------GCCGG- -5'
7822 5' -58.2 NC_001973.1 + 46189 0.66 0.835674
Target:  5'- cGCGgcccucaacaugaAGAACUguuUCGCGCGCGaCGGCCg -3'
miRNA:   3'- cCGCa------------UUUUGG---GGUGCGCGCgGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 85149 0.67 0.830836
Target:  5'- cGGCGUucuGCUgCGCGCcCGaCUGGUCg -3'
miRNA:   3'- -CCGCAuuuUGGgGUGCGcGC-GGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 12502 0.67 0.830836
Target:  5'- cGGCG--GAGgUUUACGCGUcgGCCGGCUc -3'
miRNA:   3'- -CCGCauUUUgGGGUGCGCG--CGGCCGG- -5'
7822 5' -58.2 NC_001973.1 + 109164 0.67 0.830836
Target:  5'- gGGCGagccgguCgCCCGCGCGCucGCCGaGCg -3'
miRNA:   3'- -CCGCauuuu--G-GGGUGCGCG--CGGC-CGg -5'
7822 5' -58.2 NC_001973.1 + 127370 0.67 0.830836
Target:  5'- cGCGUAAGAUuuUACGU--GCCGGCa -3'
miRNA:   3'- cCGCAUUUUGggGUGCGcgCGGCCGg -5'
7822 5' -58.2 NC_001973.1 + 41871 0.67 0.830836
Target:  5'- cGCGU---GCCUCACGUuCGCC-GCCu -3'
miRNA:   3'- cCGCAuuuUGGGGUGCGcGCGGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.