miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7828 3' -59.7 NC_001973.1 + 111938 0.66 0.785129
Target:  5'- cGCGgcGGCGacuucuCCGAccCGGCGGcCGAGc-- -3'
miRNA:   3'- -CGCauCCGC------GGCU--GCCGCC-GCUCuua -5'
7828 3' -59.7 NC_001973.1 + 86443 0.66 0.785129
Target:  5'- aGCGacgacGGC-CgCGGCGGCGGCG-GAAg -3'
miRNA:   3'- -CGCau---CCGcG-GCUGCCGCCGCuCUUa -5'
7828 3' -59.7 NC_001973.1 + 23275 0.66 0.785129
Target:  5'- cGCGcuuGC-CCGGCGGCGGCGGu--- -3'
miRNA:   3'- -CGCaucCGcGGCUGCCGCCGCUcuua -5'
7828 3' -59.7 NC_001973.1 + 90295 0.66 0.776134
Target:  5'- gGUGUucaAGGCGCacaguCGGuCGGCGGgCGAGGc- -3'
miRNA:   3'- -CGCA---UCCGCG-----GCU-GCCGCC-GCUCUua -5'
7828 3' -59.7 NC_001973.1 + 55654 0.66 0.776134
Target:  5'- cGCGUcggauGGGaGCCGAggcCGGCGGUGAa--- -3'
miRNA:   3'- -CGCA-----UCCgCGGCU---GCCGCCGCUcuua -5'
7828 3' -59.7 NC_001973.1 + 121305 0.66 0.757786
Target:  5'- cGCGgcGcGCGCCGGCGGaCGcGcCGAcGAGc -3'
miRNA:   3'- -CGCauC-CGCGGCUGCC-GC-C-GCU-CUUa -5'
7828 3' -59.7 NC_001973.1 + 83964 0.66 0.757786
Target:  5'- cGCGUcgAGGCagcagGCCGAgggcaCGGUGGCGAa--- -3'
miRNA:   3'- -CGCA--UCCG-----CGGCU-----GCCGCCGCUcuua -5'
7828 3' -59.7 NC_001973.1 + 94404 0.66 0.748451
Target:  5'- cGCGgcccgcGGCGCCGcccggacCGGCGGCGuuGGc -3'
miRNA:   3'- -CGCau----CCGCGGCu------GCCGCCGCucUUa -5'
7828 3' -59.7 NC_001973.1 + 17342 0.66 0.748451
Target:  5'- cCGUGGGggucaCGCCGAUuucGCGGCGAGc-- -3'
miRNA:   3'- cGCAUCC-----GCGGCUGc--CGCCGCUCuua -5'
7828 3' -59.7 NC_001973.1 + 26176 0.67 0.739019
Target:  5'- gGCGcGGGCGCguCGACGGCGcuccaguuGCG-GAAg -3'
miRNA:   3'- -CGCaUCCGCG--GCUGCCGC--------CGCuCUUa -5'
7828 3' -59.7 NC_001973.1 + 60668 0.67 0.7295
Target:  5'- uCGUucaAGGaGCuCGGCaGCGGCGAGAGa -3'
miRNA:   3'- cGCA---UCCgCG-GCUGcCGCCGCUCUUa -5'
7828 3' -59.7 NC_001973.1 + 146070 0.67 0.728543
Target:  5'- ----cGGCGCCGAgcCGGCucgggcgGGCGGGGAc -3'
miRNA:   3'- cgcauCCGCGGCU--GCCG-------CCGCUCUUa -5'
7828 3' -59.7 NC_001973.1 + 45946 0.67 0.719901
Target:  5'- cGUGUAcGGCGCgcucuUGACGGCGGCcGGc-- -3'
miRNA:   3'- -CGCAU-CCGCG-----GCUGCCGCCGcUCuua -5'
7828 3' -59.7 NC_001973.1 + 28950 0.67 0.710231
Target:  5'- gGCGgcagcGGGgGCCGGCagucgGGCGGCGAn--- -3'
miRNA:   3'- -CGCa----UCCgCGGCUG-----CCGCCGCUcuua -5'
7828 3' -59.7 NC_001973.1 + 93590 0.67 0.700498
Target:  5'- cGCGUAGugcccGCGCUGGCGGacaGGCccgacaagGAGGAg -3'
miRNA:   3'- -CGCAUC-----CGCGGCUGCCg--CCG--------CUCUUa -5'
7828 3' -59.7 NC_001973.1 + 136453 0.67 0.694632
Target:  5'- cGCGUAGGgcCGCgCGAaguaggccacguagcCGGCGGCGuGGc- -3'
miRNA:   3'- -CGCAUCC--GCG-GCU---------------GCCGCCGCuCUua -5'
7828 3' -59.7 NC_001973.1 + 104342 0.67 0.690711
Target:  5'- uCGUGcGGCuucaCGGCGGCGGCGAcGAu- -3'
miRNA:   3'- cGCAU-CCGcg--GCUGCCGCCGCU-CUua -5'
7828 3' -59.7 NC_001973.1 + 94283 0.67 0.690711
Target:  5'- aCG-AGGCGCCGAgggaaGGCGGCGc---- -3'
miRNA:   3'- cGCaUCCGCGGCUg----CCGCCGCucuua -5'
7828 3' -59.7 NC_001973.1 + 105369 0.67 0.690711
Target:  5'- cGCGgAGGCGUCGGCGGCuugaCGAGc-- -3'
miRNA:   3'- -CGCaUCCGCGGCUGCCGcc--GCUCuua -5'
7828 3' -59.7 NC_001973.1 + 117514 0.67 0.690711
Target:  5'- cCGgcGGCGCguaGAcuuccaCGGCGGUGGGggUg -3'
miRNA:   3'- cGCauCCGCGg--CU------GCCGCCGCUCuuA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.