miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7833 3' -58.3 NC_001973.1 + 71790 0.66 0.818715
Target:  5'- cCGGCGGCGCC---CCCGUCgccGCUc-- -3'
miRNA:   3'- -GCCGCCGUGGuucGGGCGGa--UGAuaa -5'
7833 3' -58.3 NC_001973.1 + 158688 0.66 0.810056
Target:  5'- cCGGCGGC--CGAGCgCgCGCCUACc--- -3'
miRNA:   3'- -GCCGCCGugGUUCG-G-GCGGAUGauaa -5'
7833 3' -58.3 NC_001973.1 + 55231 0.66 0.810056
Target:  5'- gCGGCGGCGgCGGGCggcgagagGCCUGCUc-- -3'
miRNA:   3'- -GCCGCCGUgGUUCGgg------CGGAUGAuaa -5'
7833 3' -58.3 NC_001973.1 + 24142 0.66 0.810056
Target:  5'- gGuGCGcGCGCC--GCCCGCCUcggcGCUGg- -3'
miRNA:   3'- gC-CGC-CGUGGuuCGGGCGGA----UGAUaa -5'
7833 3' -58.3 NC_001973.1 + 4451 0.66 0.801237
Target:  5'- gCGGCGGCGCCGuGCCgacaaaCGCaaACUcgUg -3'
miRNA:   3'- -GCCGCCGUGGUuCGG------GCGgaUGAuaA- -5'
7833 3' -58.3 NC_001973.1 + 8100 0.66 0.801237
Target:  5'- aCGGCGaGCACC-GGCCgGCUcgUGCa--- -3'
miRNA:   3'- -GCCGC-CGUGGuUCGGgCGG--AUGauaa -5'
7833 3' -58.3 NC_001973.1 + 110789 0.66 0.795872
Target:  5'- cCGGCGGCACgGcgacgacgacgacgaGGCCgCGCCggACg--- -3'
miRNA:   3'- -GCCGCCGUGgU---------------UCGG-GCGGa-UGauaa -5'
7833 3' -58.3 NC_001973.1 + 120502 0.66 0.792266
Target:  5'- cCGaGCGGCACCuuuugucggacgAGGCUCGCg-ACUAUUu -3'
miRNA:   3'- -GC-CGCCGUGG------------UUCGGGCGgaUGAUAA- -5'
7833 3' -58.3 NC_001973.1 + 103958 0.66 0.783152
Target:  5'- -cGCGGCGCCAgcAGCCUaGCCgggGCg--- -3'
miRNA:   3'- gcCGCCGUGGU--UCGGG-CGGa--UGauaa -5'
7833 3' -58.3 NC_001973.1 + 103234 0.66 0.783152
Target:  5'- aCGGCGGaCGCCAucgcguGGaCCGCCgucaagcguaaaUACUAUUg -3'
miRNA:   3'- -GCCGCC-GUGGU------UCgGGCGG------------AUGAUAA- -5'
7833 3' -58.3 NC_001973.1 + 138507 0.66 0.782233
Target:  5'- aGGUGcGCgaaaagaacuugaACCGcgAGCCCGCCUugUGc- -3'
miRNA:   3'- gCCGC-CG-------------UGGU--UCGGGCGGAugAUaa -5'
7833 3' -58.3 NC_001973.1 + 8810 0.66 0.772971
Target:  5'- -cGCGGCGCgaagacacgaCGAGCCCGCCcgccgucccgcgcUGCUGg- -3'
miRNA:   3'- gcCGCCGUG----------GUUCGGGCGG-------------AUGAUaa -5'
7833 3' -58.3 NC_001973.1 + 38990 0.67 0.755039
Target:  5'- aCGGCGGUGCgCAGucGCgCGCCgacgACUAUc -3'
miRNA:   3'- -GCCGCCGUG-GUU--CGgGCGGa---UGAUAa -5'
7833 3' -58.3 NC_001973.1 + 23574 0.67 0.735744
Target:  5'- cCGGCGGaCGCgccGCCCGCgCUGCg--- -3'
miRNA:   3'- -GCCGCC-GUGguuCGGGCG-GAUGauaa -5'
7833 3' -58.3 NC_001973.1 + 94299 0.67 0.735744
Target:  5'- aGGCGGCGC---GCCCGCCa------ -3'
miRNA:   3'- gCCGCCGUGguuCGGGCGGaugauaa -5'
7833 3' -58.3 NC_001973.1 + 109128 0.67 0.725958
Target:  5'- gCGGCGGCgGCCucuuGGGCgCCGCCUcgACg--- -3'
miRNA:   3'- -GCCGCCG-UGG----UUCG-GGCGGA--UGauaa -5'
7833 3' -58.3 NC_001973.1 + 104237 0.67 0.716092
Target:  5'- uCGGCGcGCugCGcGUCCGUCaGCUGUUc -3'
miRNA:   3'- -GCCGC-CGugGUuCGGGCGGaUGAUAA- -5'
7833 3' -58.3 NC_001973.1 + 158199 0.67 0.716092
Target:  5'- cCGGCGGCACCuGGUCgCGUCU-Cg--- -3'
miRNA:   3'- -GCCGCCGUGGuUCGG-GCGGAuGauaa -5'
7833 3' -58.3 NC_001973.1 + 47814 0.68 0.706155
Target:  5'- -cGCGuGCGCCAAaucGCCCGCCcGCUc-- -3'
miRNA:   3'- gcCGC-CGUGGUU---CGGGCGGaUGAuaa -5'
7833 3' -58.3 NC_001973.1 + 83043 0.68 0.706155
Target:  5'- aGGCGGCGCgcccguCGAGCCCGCg-GCc--- -3'
miRNA:   3'- gCCGCCGUG------GUUCGGGCGgaUGauaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.