miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7834 3' -57.5 NC_001973.1 + 6016 1.09 0.00212
Target:  5'- gAUGGUCUUCGCGCUCGACGAGCGCGCu -3'
miRNA:   3'- -UACCAGAAGCGCGAGCUGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 109172 0.87 0.070614
Target:  5'- -cGGUCgcccgCGCGCUCGcCGAGCGCGCc -3'
miRNA:   3'- uaCCAGaa---GCGCGAGCuGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 45628 0.82 0.146101
Target:  5'- -aGGUCcaCGCGCUCGuCGAGCGCGg -3'
miRNA:   3'- uaCCAGaaGCGCGAGCuGCUCGCGCg -5'
7834 3' -57.5 NC_001973.1 + 106964 0.81 0.1576
Target:  5'- -cGGg---CGCGCUCGGCGuGCGCGCg -3'
miRNA:   3'- uaCCagaaGCGCGAGCUGCuCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 6423 0.8 0.187658
Target:  5'- -cGG-CggCGCGC-CGACGAGCGCGCc -3'
miRNA:   3'- uaCCaGaaGCGCGaGCUGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 14356 0.79 0.233621
Target:  5'- cGUGGUCggCGUGgUCGACGGG-GCGCg -3'
miRNA:   3'- -UACCAGaaGCGCgAGCUGCUCgCGCG- -5'
7834 3' -57.5 NC_001973.1 + 144237 0.77 0.288689
Target:  5'- cUGGUCgagugCGCGCUggcgGACGAGgGCGCg -3'
miRNA:   3'- uACCAGaa---GCGCGAg---CUGCUCgCGCG- -5'
7834 3' -57.5 NC_001973.1 + 118425 0.76 0.353453
Target:  5'- cUGGcCgcCGgGCUCGACGAGCGCaaGCg -3'
miRNA:   3'- uACCaGaaGCgCGAGCUGCUCGCG--CG- -5'
7834 3' -57.5 NC_001973.1 + 23082 0.76 0.353453
Target:  5'- gAUGG-CgcUGCGCUCGGCcgaaGAGCGCGCc -3'
miRNA:   3'- -UACCaGaaGCGCGAGCUG----CUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 23199 0.75 0.369172
Target:  5'- gAUGacg--CGCGC-CGACGAGCGCGCa -3'
miRNA:   3'- -UACcagaaGCGCGaGCUGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 35418 0.75 0.377209
Target:  5'- --aGUCuUUCGCGCUCGACGcGCaacGCGCg -3'
miRNA:   3'- uacCAG-AAGCGCGAGCUGCuCG---CGCG- -5'
7834 3' -57.5 NC_001973.1 + 157898 0.75 0.377209
Target:  5'- -aGGUCgcggccgcCGCGCcCG-CGAGCGCGCa -3'
miRNA:   3'- uaCCAGaa------GCGCGaGCuGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 73694 0.74 0.427835
Target:  5'- -gGGgcccCgcCGCGCagUCGACGGGCGCGCc -3'
miRNA:   3'- uaCCa---GaaGCGCG--AGCUGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 81082 0.74 0.434884
Target:  5'- -aGGUCgauggcgUUCGCGCUgGGCGcgggcucguugaaGGCGCGCu -3'
miRNA:   3'- uaCCAG-------AAGCGCGAgCUGC-------------UCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 34477 0.73 0.463735
Target:  5'- gGUGGUgcagUUgGCGCUCacgaacuugGACGAGCGCGUg -3'
miRNA:   3'- -UACCAg---AAgCGCGAG---------CUGCUCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 104225 0.73 0.472954
Target:  5'- -aGGcgaUCGCGCUCGGCGcGCuGCGCg -3'
miRNA:   3'- uaCCagaAGCGCGAGCUGCuCG-CGCG- -5'
7834 3' -57.5 NC_001973.1 + 68935 0.73 0.482265
Target:  5'- -aGGgCUucaUCGUGCUCGGCGucgAGCGCGUc -3'
miRNA:   3'- uaCCaGA---AGCGCGAGCUGC---UCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 36563 0.73 0.491664
Target:  5'- aAUGGUUUUUggcggGCGCgUUGACGcGCGCGCu -3'
miRNA:   3'- -UACCAGAAG-----CGCG-AGCUGCuCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 115739 0.73 0.4945
Target:  5'- -cGGUCgucgcacaaguuugUCGUGCUCGAaugcugcCGcAGCGCGCg -3'
miRNA:   3'- uaCCAGa-------------AGCGCGAGCU-------GC-UCGCGCG- -5'
7834 3' -57.5 NC_001973.1 + 45181 0.72 0.520346
Target:  5'- -cGGUCgaacagcacgUUGCGCUCGAucuggcCGGGCGCGa -3'
miRNA:   3'- uaCCAGa---------AGCGCGAGCU------GCUCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.