miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7834 5' -51 NC_001973.1 + 7635 0.66 0.995807
Target:  5'- uGCGCGCGCUCgccgCCA-GcGGGc---- -3'
miRNA:   3'- -CGCGCGCGAGaa--GGUuCaCCUuuucc -5'
7834 5' -51 NC_001973.1 + 58743 0.66 0.995109
Target:  5'- aGCgGCGCGCcgUCgcgccCCucGUGGAAGAGu -3'
miRNA:   3'- -CG-CGCGCG--AGaa---GGuuCACCUUUUCc -5'
7834 5' -51 NC_001973.1 + 117516 0.66 0.99432
Target:  5'- gGCgGCGCGUagaCUUCCAcggcGGUGGggGu-- -3'
miRNA:   3'- -CG-CGCGCGa--GAAGGU----UCACCuuUucc -5'
7834 5' -51 NC_001973.1 + 63192 0.66 0.99432
Target:  5'- -aGCGCGCUCgacgacUCCAaauAGUaGAAGAGc -3'
miRNA:   3'- cgCGCGCGAGa-----AGGU---UCAcCUUUUCc -5'
7834 5' -51 NC_001973.1 + 34509 0.66 0.99343
Target:  5'- aGCGCGUGUggUUCagCAAGUGGAGc--- -3'
miRNA:   3'- -CGCGCGCGagAAG--GUUCACCUUuucc -5'
7834 5' -51 NC_001973.1 + 56372 0.66 0.99343
Target:  5'- gGCGcCGCGCUCggcgCCAGGcucGGuAucGGg -3'
miRNA:   3'- -CGC-GCGCGAGaa--GGUUCa--CCuUuuCC- -5'
7834 5' -51 NC_001973.1 + 13537 0.67 0.991318
Target:  5'- -aGCGCGCcaucagCUUCgAAucGGAGGAGGa -3'
miRNA:   3'- cgCGCGCGa-----GAAGgUUcaCCUUUUCC- -5'
7834 5' -51 NC_001973.1 + 66811 0.67 0.9912
Target:  5'- uGCGCGCGCaguucgUCUUgggcaagcccgCCGucgacgagaacaaGGUGGAGAAGu -3'
miRNA:   3'- -CGCGCGCG------AGAA-----------GGU-------------UCACCUUUUCc -5'
7834 5' -51 NC_001973.1 + 10503 0.67 0.988412
Target:  5'- cGgGCGCGCUCgcgguucagcgCCAGGcaguaGGAGGAGc -3'
miRNA:   3'- -CgCGCGCGAGaa---------GGUUCa----CCUUUUCc -5'
7834 5' -51 NC_001973.1 + 143191 0.68 0.981679
Target:  5'- aGUGCGCGCUCUUCUgcuGUGaGuAAAAu- -3'
miRNA:   3'- -CGCGCGCGAGAAGGuu-CAC-C-UUUUcc -5'
7834 5' -51 NC_001973.1 + 37789 0.68 0.981679
Target:  5'- cGCGCgGCGCUCUcguUCCAAuuUGGAGc--- -3'
miRNA:   3'- -CGCG-CGCGAGA---AGGUUc-ACCUUuucc -5'
7834 5' -51 NC_001973.1 + 83096 0.68 0.977128
Target:  5'- gGCGCcgucGCGCUCaUgCAAGUGGAc---- -3'
miRNA:   3'- -CGCG----CGCGAGaAgGUUCACCUuuucc -5'
7834 5' -51 NC_001973.1 + 83459 0.68 0.977128
Target:  5'- aGCGcCGCGCUCgUCgAGGaGGAGGuguGGu -3'
miRNA:   3'- -CGC-GCGCGAGaAGgUUCaCCUUUu--CC- -5'
7834 5' -51 NC_001973.1 + 124772 0.68 0.975614
Target:  5'- cGCGCGCGCUCUguucgacuaucuggCCGcc-GGcGAGGGc -3'
miRNA:   3'- -CGCGCGCGAGAa-------------GGUucaCCuUUUCC- -5'
7834 5' -51 NC_001973.1 + 120604 0.68 0.974564
Target:  5'- cGCgGUGCGC-CUUCCAcgccgccuaucuGGUGGAcGAGc -3'
miRNA:   3'- -CG-CGCGCGaGAAGGU------------UCACCUuUUCc -5'
7834 5' -51 NC_001973.1 + 22539 0.69 0.957417
Target:  5'- uGCGCGCGacaggugacggcgggCgagUUCGAGUGcGAGGAGGg -3'
miRNA:   3'- -CGCGCGCga-------------Ga--AGGUUCAC-CUUUUCC- -5'
7834 5' -51 NC_001973.1 + 135944 0.71 0.908665
Target:  5'- -gGCGCGCcaagugcgCCAAGUGGcAAAGGu -3'
miRNA:   3'- cgCGCGCGagaa----GGUUCACCuUUUCC- -5'
7834 5' -51 NC_001973.1 + 40276 0.77 0.669675
Target:  5'- aCGgGCGCUCUU-CAGGUGGcguuGAAAGGg -3'
miRNA:   3'- cGCgCGCGAGAAgGUUCACC----UUUUCC- -5'
7834 5' -51 NC_001973.1 + 6051 1.14 0.004486
Target:  5'- cGCGCGCGCUCUUCCAAGUGGAAAAGGa -3'
miRNA:   3'- -CGCGCGCGAGAAGGUUCACCUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.