miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7836 3' -58.9 NC_001973.1 + 4951 1.12 0.001313
Target:  5'- gGCCGGUCCACGAACGGCACGGCGAGCc -3'
miRNA:   3'- -CGGCCAGGUGCUUGCCGUGCCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 4799 0.83 0.111685
Target:  5'- uGCCGauGUCCACGAGCGcGUACGGCGAcacGCu -3'
miRNA:   3'- -CGGC--CAGGUGCUUGC-CGUGCCGCU---CG- -5'
7836 3' -58.9 NC_001973.1 + 74631 0.82 0.13648
Target:  5'- aGCCGGUCgAUGAGucGCGCGGUGAGCg -3'
miRNA:   3'- -CGGCCAGgUGCUUgcCGUGCCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 45993 0.81 0.154454
Target:  5'- cGCUGGUgCCGCGAugcCGGCGCG-CGAGCg -3'
miRNA:   3'- -CGGCCA-GGUGCUu--GCCGUGCcGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 39488 0.79 0.21154
Target:  5'- cGCCuGGUcucCCAUGAGCGGCACGcccaCGAGCg -3'
miRNA:   3'- -CGG-CCA---GGUGCUUGCCGUGCc---GCUCG- -5'
7836 3' -58.9 NC_001973.1 + 159484 0.78 0.232456
Target:  5'- cGCCGGUCCuuGGAacagaGGCGCGuCGGGCg -3'
miRNA:   3'- -CGGCCAGGugCUUg----CCGUGCcGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 3710 0.76 0.312565
Target:  5'- cGCCGGU-CGCGAccgcGCGGCACGuGCaGGCc -3'
miRNA:   3'- -CGGCCAgGUGCU----UGCCGUGC-CGcUCG- -5'
7836 3' -58.9 NC_001973.1 + 122586 0.75 0.361402
Target:  5'- cGCCGGUCCgaaucuuugcugcgGCGGaggcgucgGCGGCGCcgacGCGGGCg -3'
miRNA:   3'- -CGGCCAGG--------------UGCU--------UGCCGUGc---CGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 88545 0.75 0.363709
Target:  5'- aGCaGGUCCACGc-CGGCGuCGGCGcGCg -3'
miRNA:   3'- -CGgCCAGGUGCuuGCCGU-GCCGCuCG- -5'
7836 3' -58.9 NC_001973.1 + 6409 0.74 0.387336
Target:  5'- gGCCGaGUgCGCGGcgGCGGCGCGccgaCGAGCg -3'
miRNA:   3'- -CGGC-CAgGUGCU--UGCCGUGCc---GCUCG- -5'
7836 3' -58.9 NC_001973.1 + 152378 0.74 0.403637
Target:  5'- aGCCGG---ACGGcCGGCGCgGGCGGGCg -3'
miRNA:   3'- -CGGCCaggUGCUuGCCGUG-CCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 135910 0.74 0.420367
Target:  5'- gGCCGGacgaucgUCGCaGAGCgGGCGCGGCGAugGCg -3'
miRNA:   3'- -CGGCCa------GGUG-CUUG-CCGUGCCGCU--CG- -5'
7836 3' -58.9 NC_001973.1 + 14363 0.73 0.437508
Target:  5'- gGCgUGGUCgACGG--GGCGCGGCGAGg -3'
miRNA:   3'- -CG-GCCAGgUGCUugCCGUGCCGCUCg -5'
7836 3' -58.9 NC_001973.1 + 121215 0.73 0.437508
Target:  5'- cUCGGUCagaGCGAgcgccacgcgGCGGCGCGGCGcgucGCa -3'
miRNA:   3'- cGGCCAGg--UGCU----------UGCCGUGCCGCu---CG- -5'
7836 3' -58.9 NC_001973.1 + 96877 0.73 0.446228
Target:  5'- uGgUGG-CCGCGGAucUGuGCGCGGCGGGCg -3'
miRNA:   3'- -CgGCCaGGUGCUU--GC-CGUGCCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 30369 0.73 0.455044
Target:  5'- cGCCGGcgCgGCGAcucgggugcggGcCGGCGCGGCG-GCg -3'
miRNA:   3'- -CGGCCa-GgUGCU-----------U-GCCGUGCCGCuCG- -5'
7836 3' -58.9 NC_001973.1 + 8152 0.73 0.472953
Target:  5'- cCUGuUUCGCGAACGGCAccguCGGCGGGUc -3'
miRNA:   3'- cGGCcAGGUGCUUGCCGU----GCCGCUCG- -5'
7836 3' -58.9 NC_001973.1 + 124732 0.73 0.476578
Target:  5'- gGCCuGGaCCGCGAGCGGUucugcgccacaacgcGCGGUGcGCg -3'
miRNA:   3'- -CGG-CCaGGUGCUUGCCG---------------UGCCGCuCG- -5'
7836 3' -58.9 NC_001973.1 + 52161 0.72 0.48204
Target:  5'- aGCCGGUgggcgccguaCUugGcGACGaGCGCGGCGGGg -3'
miRNA:   3'- -CGGCCA----------GGugC-UUGC-CGUGCCGCUCg -5'
7836 3' -58.9 NC_001973.1 + 16905 0.72 0.48204
Target:  5'- cGCCGG-CgGCG-GCGGCcucucgGCGGCGcAGCa -3'
miRNA:   3'- -CGGCCaGgUGCuUGCCG------UGCCGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.