miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7837 3' -54.3 NC_001973.1 + 38933 0.66 0.972953
Target:  5'- cGCGCgGuuugaaccguuucaaUGACCGCgaaGAGGcCGGCGa -3'
miRNA:   3'- -CGCGgU---------------GCUGGCGaa-UUUCaGCCGCc -5'
7837 3' -54.3 NC_001973.1 + 71717 0.66 0.972953
Target:  5'- gGCGCCGCcGCCGCcgcgccccCGGCGc -3'
miRNA:   3'- -CGCGGUGcUGGCGaauuuca-GCCGCc -5'
7837 3' -54.3 NC_001973.1 + 45572 0.66 0.971859
Target:  5'- cGCGCgGCaACCGCUccaugggcacgUAccGUCgccGGCGGa -3'
miRNA:   3'- -CGCGgUGcUGGCGA-----------AUuuCAG---CCGCC- -5'
7837 3' -54.3 NC_001973.1 + 28972 0.66 0.971859
Target:  5'- cGgGCgGCGACgCGUUgu-AGUCGG-GGa -3'
miRNA:   3'- -CgCGgUGCUG-GCGAauuUCAGCCgCC- -5'
7837 3' -54.3 NC_001973.1 + 16954 0.66 0.971859
Target:  5'- cGCGaaGCGGCCGUgcccGAGUuuuuggucgUGGCGGc -3'
miRNA:   3'- -CGCggUGCUGGCGaau-UUCA---------GCCGCC- -5'
7837 3' -54.3 NC_001973.1 + 76994 0.66 0.970733
Target:  5'- gGCGCCACG-CUGaucaccucGUCgGGCGGc -3'
miRNA:   3'- -CGCGGUGCuGGCgaauuu--CAG-CCGCC- -5'
7837 3' -54.3 NC_001973.1 + 137875 0.66 0.968983
Target:  5'- cGCgGUCAgGGCCGC-----GUCGGCGa -3'
miRNA:   3'- -CG-CGGUgCUGGCGaauuuCAGCCGCc -5'
7837 3' -54.3 NC_001973.1 + 22738 0.66 0.965905
Target:  5'- -aGCCGCGGCCGUaucugugcGAGGggGGCGa -3'
miRNA:   3'- cgCGGUGCUGGCGaa------UUUCagCCGCc -5'
7837 3' -54.3 NC_001973.1 + 41714 0.66 0.965905
Target:  5'- uCGCCACGugCGCc--GAGUuuuaCGGCu- -3'
miRNA:   3'- cGCGGUGCugGCGaauUUCA----GCCGcc -5'
7837 3' -54.3 NC_001973.1 + 109852 0.66 0.965905
Target:  5'- gGCGUCGCcGCCGCcgacGAGgacgCGGCGc -3'
miRNA:   3'- -CGCGGUGcUGGCGaau-UUCa---GCCGCc -5'
7837 3' -54.3 NC_001973.1 + 17476 0.66 0.965905
Target:  5'- aUGCCguGCG-CCGC--GAGGUCGGCu- -3'
miRNA:   3'- cGCGG--UGCuGGCGaaUUUCAGCCGcc -5'
7837 3' -54.3 NC_001973.1 + 123254 0.66 0.965905
Target:  5'- uGCGUCAacagauCGACCGU------UCGGCGGu -3'
miRNA:   3'- -CGCGGU------GCUGGCGaauuucAGCCGCC- -5'
7837 3' -54.3 NC_001973.1 + 143417 0.66 0.965905
Target:  5'- -gGUguCGAUgCGCUUGAucAGcUCGGCGGg -3'
miRNA:   3'- cgCGguGCUG-GCGAAUU--UC-AGCCGCC- -5'
7837 3' -54.3 NC_001973.1 + 8021 0.66 0.962617
Target:  5'- cGgGCCGCGGCCGCgacacgcacaGAucauGUUGGCu- -3'
miRNA:   3'- -CgCGGUGCUGGCGaa--------UUu---CAGCCGcc -5'
7837 3' -54.3 NC_001973.1 + 38329 0.66 0.962617
Target:  5'- uGCGCCAacaUGGCgGCgucagUGccGcCGGCGGc -3'
miRNA:   3'- -CGCGGU---GCUGgCGa----AUuuCaGCCGCC- -5'
7837 3' -54.3 NC_001973.1 + 58626 0.66 0.962617
Target:  5'- uGUGCCugaaGACgCGCUUcGAcGcCGGCGGc -3'
miRNA:   3'- -CGCGGug--CUG-GCGAAuUU-CaGCCGCC- -5'
7837 3' -54.3 NC_001973.1 + 74250 0.66 0.962617
Target:  5'- uGCGCC-UGcCCGau----GUCGGCGGu -3'
miRNA:   3'- -CGCGGuGCuGGCgaauuuCAGCCGCC- -5'
7837 3' -54.3 NC_001973.1 + 56188 0.66 0.959115
Target:  5'- cGCGCUcgACGuagUCGCUUuc-GUCGGCGu -3'
miRNA:   3'- -CGCGG--UGCu--GGCGAAuuuCAGCCGCc -5'
7837 3' -54.3 NC_001973.1 + 104241 0.66 0.959115
Target:  5'- cGCGCUGCGcguCCGUcagcuGuUCGGCGGc -3'
miRNA:   3'- -CGCGGUGCu--GGCGaauuuC-AGCCGCC- -5'
7837 3' -54.3 NC_001973.1 + 81789 0.66 0.958753
Target:  5'- gGCGCgaaagugCACGGCCGCggu--GUCcGGCGc -3'
miRNA:   3'- -CGCG-------GUGCUGGCGaauuuCAG-CCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.