Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
784 | 3' | -52.2 | NC_000852.3 | + | 144116 | 0.67 | 0.99656 |
Target: 5'- --uCGAUGGCGUCGGUccguuUGCUG-GUUGg -3' miRNA: 3'- accGUUGCCGCAGUCA-----AUGACgCAAC- -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 259520 | 0.67 | 0.994623 |
Target: 5'- -uGCAACGGUuucuuuugCGGUUGCUGCGa-- -3' miRNA: 3'- acCGUUGCCGca------GUCAAUGACGCaac -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 210007 | 0.68 | 0.99381 |
Target: 5'- uUGGCAgucACGGUuUCGGUguugccgagUACUGCGgcGg -3' miRNA: 3'- -ACCGU---UGCCGcAGUCA---------AUGACGCaaC- -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 323044 | 0.68 | 0.989521 |
Target: 5'- gUGGCAACGGCGUUuGUU--UGCa--- -3' miRNA: 3'- -ACCGUUGCCGCAGuCAAugACGcaac -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 63721 | 0.7 | 0.976103 |
Target: 5'- cGGCAGCgGGUGguaaCGGUUACUucuucgggaaugggGCGUUGu -3' miRNA: 3'- aCCGUUG-CCGCa---GUCAAUGA--------------CGCAAC- -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 64098 | 0.7 | 0.976103 |
Target: 5'- cGGCAGCgGGUGguaaCGGUUACUucuucgggaaugggGCGUUGu -3' miRNA: 3'- aCCGUUG-CCGCa---GUCAAUGA--------------CGCAAC- -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 12711 | 0.7 | 0.968834 |
Target: 5'- aUGGUGACGGCGguacaaaCAGUguaaaaucACUGCGUa- -3' miRNA: 3'- -ACCGUUGCCGCa------GUCAa-------UGACGCAac -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 236609 | 0.72 | 0.928575 |
Target: 5'- aGaCAACuGCGUCAGUUGCUGUGg-- -3' miRNA: 3'- aCcGUUGcCGCAGUCAAUGACGCaac -5' |
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784 | 3' | -52.2 | NC_000852.3 | + | 282766 | 1.09 | 0.012721 |
Target: 5'- uUGGCAACGGCGUCAGUUACUGCGUUGa -3' miRNA: 3'- -ACCGUUGCCGCAGUCAAUGACGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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