miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7840 3' -57.4 NC_001973.1 + 102644 0.66 0.844456
Target:  5'- cGCGCGAcuggcaaacgcGCUCGUGCCagGUGcGCCu-- -3'
miRNA:   3'- uUGCGUU-----------UGAGCACGGg-CAC-CGGcua -5'
7840 3' -57.4 NC_001973.1 + 64872 0.66 0.827915
Target:  5'- -cUGCGGGCUCGcGCCCGaagugcUGGCgCGGg -3'
miRNA:   3'- uuGCGUUUGAGCaCGGGC------ACCG-GCUa -5'
7840 3' -57.4 NC_001973.1 + 6426 0.66 0.819371
Target:  5'- cGGCGCGccGACgagCGcGCCCGUcGCCGGa -3'
miRNA:   3'- -UUGCGU--UUGa--GCaCGGGCAcCGGCUa -5'
7840 3' -57.4 NC_001973.1 + 141444 0.66 0.819371
Target:  5'- gAACGCGuuCUaCGUGCCgCGcgacgGGCUGGUg -3'
miRNA:   3'- -UUGCGUuuGA-GCACGG-GCa----CCGGCUA- -5'
7840 3' -57.4 NC_001973.1 + 88765 0.66 0.819371
Target:  5'- cGCGCAGgcACUCGUGCCCGcucaCCGu- -3'
miRNA:   3'- uUGCGUU--UGAGCACGGGCacc-GGCua -5'
7840 3' -57.4 NC_001973.1 + 67778 0.66 0.810656
Target:  5'- uGCGCGGGCUguugaacuugaCGgagaauugGCCgGUGGCCGGg -3'
miRNA:   3'- uUGCGUUUGA-----------GCa-------CGGgCACCGGCUa -5'
7840 3' -57.4 NC_001973.1 + 95085 0.67 0.764807
Target:  5'- aGGCGCugcagcGCUCGUGCgCG-GGCCGc- -3'
miRNA:   3'- -UUGCGuu----UGAGCACGgGCaCCGGCua -5'
7840 3' -57.4 NC_001973.1 + 61080 0.69 0.655136
Target:  5'- aGGCGCAGAC-CGggcagGCCgCGcGGCCGAc -3'
miRNA:   3'- -UUGCGUUUGaGCa----CGG-GCaCCGGCUa -5'
7840 3' -57.4 NC_001973.1 + 111260 0.71 0.533041
Target:  5'- cGACGCGGACgCGcUGCCCGUGGgCa-- -3'
miRNA:   3'- -UUGCGUUUGaGC-ACGGGCACCgGcua -5'
7840 3' -57.4 NC_001973.1 + 142417 0.71 0.533041
Target:  5'- --gGCAGACgaUCGUGCCCGgcgaGCCGAUc -3'
miRNA:   3'- uugCGUUUG--AGCACGGGCac--CGGCUA- -5'
7840 3' -57.4 NC_001973.1 + 4470 1.03 0.004988
Target:  5'- aAACGCAAACUCGUGCCCGUGGCCGAUu -3'
miRNA:   3'- -UUGCGUUUGAGCACGGGCACCGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.