miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7840 5' -55.1 NC_001973.1 + 4504 1.06 0.005888
Target:  5'- aAAAUCAACCACGGGUCCGCGUCCACGu -3'
miRNA:   3'- -UUUAGUUGGUGCCCAGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 126562 0.82 0.226488
Target:  5'- uGGcgCAGCCGCGGGUCCGCGggcuuggcgaucacgUCCugGg -3'
miRNA:   3'- -UUuaGUUGGUGCCCAGGCGC---------------AGGugC- -5'
7840 5' -55.1 NC_001973.1 + 70135 0.77 0.399298
Target:  5'- -uGUCGAgCAUGGugcgcagcgcGUCCGCGUCCGCGg -3'
miRNA:   3'- uuUAGUUgGUGCC----------CAGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 39719 0.74 0.579083
Target:  5'- cAGcgCGGCCGCcauGUCCGCGUCCAUGu -3'
miRNA:   3'- -UUuaGUUGGUGcc-CAGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 26869 0.73 0.599446
Target:  5'- --cUCGACCGCGGG--CGCGUUCAUGa -3'
miRNA:   3'- uuuAGUUGGUGCCCagGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 39413 0.73 0.630153
Target:  5'- cAGGUCGGCCGCGGuGaggcgcgUCGCGUCCAgGg -3'
miRNA:   3'- -UUUAGUUGGUGCC-Ca------GGCGCAGGUgC- -5'
7840 5' -55.1 NC_001973.1 + 40349 0.72 0.659849
Target:  5'- uAGUUGuCCGCGGugaccguGUCCGUGUCCGCGa -3'
miRNA:   3'- uUUAGUuGGUGCC-------CAGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 20112 0.72 0.675149
Target:  5'- ---aCAGCCGCGGGUCCGagggcuuggugauuaCGUCUugaGCGa -3'
miRNA:   3'- uuuaGUUGGUGCCCAGGC---------------GCAGG---UGC- -5'
7840 5' -55.1 NC_001973.1 + 128150 0.71 0.701463
Target:  5'- ---aCAGCCGCGGGUCCGagggCUugGu -3'
miRNA:   3'- uuuaGUUGGUGCCCAGGCgca-GGugC- -5'
7840 5' -55.1 NC_001973.1 + 83720 0.7 0.769887
Target:  5'- --cUCGAUagagaGCGGcG-CCGCGUCCGCGa -3'
miRNA:   3'- uuuAGUUGg----UGCC-CaGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 33326 0.7 0.79755
Target:  5'- ---gCAGCUGCGGGUCacguuGCGgCCGCGg -3'
miRNA:   3'- uuuaGUUGGUGCCCAGg----CGCaGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 81802 0.7 0.79755
Target:  5'- ---aCGGCCGCGGuGUCCGgCG-CCGCc -3'
miRNA:   3'- uuuaGUUGGUGCC-CAGGC-GCaGGUGc -5'
7840 5' -55.1 NC_001973.1 + 119312 0.69 0.840548
Target:  5'- --uUCAAgaGCGGGUCgGCGcccgCCGCGa -3'
miRNA:   3'- uuuAGUUggUGCCCAGgCGCa---GGUGC- -5'
7840 5' -55.1 NC_001973.1 + 127876 0.69 0.840548
Target:  5'- uGAGUCAGCgACcGGUCgaugGCGUCCACc -3'
miRNA:   3'- -UUUAGUUGgUGcCCAGg---CGCAGGUGc -5'
7840 5' -55.1 NC_001973.1 + 21267 0.68 0.864132
Target:  5'- cAAAUCgAGCCGCGGcGUCCGCcgggCCGuCGc -3'
miRNA:   3'- -UUUAG-UUGGUGCC-CAGGCGca--GGU-GC- -5'
7840 5' -55.1 NC_001973.1 + 10102 0.68 0.864132
Target:  5'- cGAUCGAgCACGGGUCCa---CCACGc -3'
miRNA:   3'- uUUAGUUgGUGCCCAGGcgcaGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 18456 0.68 0.871582
Target:  5'- cGAcgCAugGCgACGGGUCCacugaaCGUCCGCGc -3'
miRNA:   3'- -UUuaGU--UGgUGCCCAGGc-----GCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 158922 0.68 0.878817
Target:  5'- aAAGUCGcGCCGCGcGcgaccgagccGcCCGCGUCCGCGa -3'
miRNA:   3'- -UUUAGU-UGGUGC-C----------CaGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 53921 0.68 0.885831
Target:  5'- cGAGUCGccACCACGGuGagCuCGUCCACGu -3'
miRNA:   3'- -UUUAGU--UGGUGCC-CagGcGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 143463 0.68 0.885831
Target:  5'- cAGAUCAGCuccUugGGGUaguaCCG-GUCCGCGg -3'
miRNA:   3'- -UUUAGUUG---GugCCCA----GGCgCAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.