miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7840 5' -55.1 NC_001973.1 + 40349 0.72 0.659849
Target:  5'- uAGUUGuCCGCGGugaccguGUCCGUGUCCGCGa -3'
miRNA:   3'- uUUAGUuGGUGCC-------CAGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 39413 0.73 0.630153
Target:  5'- cAGGUCGGCCGCGGuGaggcgcgUCGCGUCCAgGg -3'
miRNA:   3'- -UUUAGUUGGUGCC-Ca------GGCGCAGGUgC- -5'
7840 5' -55.1 NC_001973.1 + 26869 0.73 0.599446
Target:  5'- --cUCGACCGCGGG--CGCGUUCAUGa -3'
miRNA:   3'- uuuAGUUGGUGCCCagGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 39719 0.74 0.579083
Target:  5'- cAGcgCGGCCGCcauGUCCGCGUCCAUGu -3'
miRNA:   3'- -UUuaGUUGGUGcc-CAGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 70135 0.77 0.399298
Target:  5'- -uGUCGAgCAUGGugcgcagcgcGUCCGCGUCCGCGg -3'
miRNA:   3'- uuUAGUUgGUGCC----------CAGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 126562 0.82 0.226488
Target:  5'- uGGcgCAGCCGCGGGUCCGCGggcuuggcgaucacgUCCugGg -3'
miRNA:   3'- -UUuaGUUGGUGCCCAGGCGC---------------AGGugC- -5'
7840 5' -55.1 NC_001973.1 + 4504 1.06 0.005888
Target:  5'- aAAAUCAACCACGGGUCCGCGUCCACGu -3'
miRNA:   3'- -UUUAGUUGGUGCCCAGGCGCAGGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.