Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7840 | 5' | -55.1 | NC_001973.1 | + | 40349 | 0.72 | 0.659849 |
Target: 5'- uAGUUGuCCGCGGugaccguGUCCGUGUCCGCGa -3' miRNA: 3'- uUUAGUuGGUGCC-------CAGGCGCAGGUGC- -5' |
|||||||
7840 | 5' | -55.1 | NC_001973.1 | + | 39413 | 0.73 | 0.630153 |
Target: 5'- cAGGUCGGCCGCGGuGaggcgcgUCGCGUCCAgGg -3' miRNA: 3'- -UUUAGUUGGUGCC-Ca------GGCGCAGGUgC- -5' |
|||||||
7840 | 5' | -55.1 | NC_001973.1 | + | 26869 | 0.73 | 0.599446 |
Target: 5'- --cUCGACCGCGGG--CGCGUUCAUGa -3' miRNA: 3'- uuuAGUUGGUGCCCagGCGCAGGUGC- -5' |
|||||||
7840 | 5' | -55.1 | NC_001973.1 | + | 39719 | 0.74 | 0.579083 |
Target: 5'- cAGcgCGGCCGCcauGUCCGCGUCCAUGu -3' miRNA: 3'- -UUuaGUUGGUGcc-CAGGCGCAGGUGC- -5' |
|||||||
7840 | 5' | -55.1 | NC_001973.1 | + | 70135 | 0.77 | 0.399298 |
Target: 5'- -uGUCGAgCAUGGugcgcagcgcGUCCGCGUCCGCGg -3' miRNA: 3'- uuUAGUUgGUGCC----------CAGGCGCAGGUGC- -5' |
|||||||
7840 | 5' | -55.1 | NC_001973.1 | + | 126562 | 0.82 | 0.226488 |
Target: 5'- uGGcgCAGCCGCGGGUCCGCGggcuuggcgaucacgUCCugGg -3' miRNA: 3'- -UUuaGUUGGUGCCCAGGCGC---------------AGGugC- -5' |
|||||||
7840 | 5' | -55.1 | NC_001973.1 | + | 4504 | 1.06 | 0.005888 |
Target: 5'- aAAAUCAACCACGGGUCCGCGUCCACGu -3' miRNA: 3'- -UUUAGUUGGUGCCCAGGCGCAGGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home