miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7841 5' -55.3 NC_001973.1 + 44730 0.68 0.888446
Target:  5'- uGAACGUGUACGCGGcGUcCGUGUUCu -3'
miRNA:   3'- gCUUGCACAUGUGCCcCGcGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 138429 0.68 0.888446
Target:  5'- uGAaguuGCGcGcGCGCGGaaaGGCGCGCGUCa -3'
miRNA:   3'- gCU----UGCaCaUGUGCC---CCGCGUGCAGg -5'
7841 5' -55.3 NC_001973.1 + 14362 0.68 0.881645
Target:  5'- -cGGCGUGgucgACGGGGCGCgGCGaggCCg -3'
miRNA:   3'- gcUUGCACaug-UGCCCCGCG-UGCa--GG- -5'
7841 5' -55.3 NC_001973.1 + 120376 0.68 0.874629
Target:  5'- aGAcgGCGaGuUugGCGGGGCG-AUGUCCg -3'
miRNA:   3'- gCU--UGCaC-AugUGCCCCGCgUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 61111 0.69 0.867404
Target:  5'- gGAGCagcgGCgGCGGGGCGCgGCGUCg -3'
miRNA:   3'- gCUUGcacaUG-UGCCCCGCG-UGCAGg -5'
7841 5' -55.3 NC_001973.1 + 35909 0.69 0.867404
Target:  5'- uCGcACGUGUACuucgaaGGGGCGC-CGagcugCCg -3'
miRNA:   3'- -GCuUGCACAUGug----CCCCGCGuGCa----GG- -5'
7841 5' -55.3 NC_001973.1 + 45856 0.69 0.859975
Target:  5'- uGGGCGU---CGCGGGcGCGCGC-UCCu -3'
miRNA:   3'- gCUUGCAcauGUGCCC-CGCGUGcAGG- -5'
7841 5' -55.3 NC_001973.1 + 137260 0.69 0.844525
Target:  5'- uCGAGCcgaGUGUGCggcgGCGGGGCucggccgcGCGCGUUUu -3'
miRNA:   3'- -GCUUG---CACAUG----UGCCCCG--------CGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 151888 0.69 0.836517
Target:  5'- aGGACGUacgGCucguucuCGGGcCGCGCGUCCu -3'
miRNA:   3'- gCUUGCAca-UGu------GCCCcGCGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 120942 0.69 0.834079
Target:  5'- uCGAGCGcgGUcuGCACGGcGGCcagcgcggcgguuuGCGCGUCg -3'
miRNA:   3'- -GCUUGCa-CA--UGUGCC-CCG--------------CGUGCAGg -5'
7841 5' -55.3 NC_001973.1 + 42603 0.69 0.828329
Target:  5'- aGGAgGUGcgGCGCGaGGGCGCG-GUCg -3'
miRNA:   3'- gCUUgCACa-UGUGC-CCCGCGUgCAGg -5'
7841 5' -55.3 NC_001973.1 + 118026 0.69 0.828329
Target:  5'- gCGuACGUGUAC-C-GGGCGC-CGUUCg -3'
miRNA:   3'- -GCuUGCACAUGuGcCCCGCGuGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 133368 0.69 0.828329
Target:  5'- uCGGcCGUGUAgACGaguuuGGuGCGCGCGUCg -3'
miRNA:   3'- -GCUuGCACAUgUGC-----CC-CGCGUGCAGg -5'
7841 5' -55.3 NC_001973.1 + 120575 0.7 0.79393
Target:  5'- uCGGGCGUGcuauCACGGGcGCGCcgaGUCg -3'
miRNA:   3'- -GCUUGCACau--GUGCCC-CGCGug-CAGg -5'
7841 5' -55.3 NC_001973.1 + 6492 0.7 0.79393
Target:  5'- aGGGCGUGcuguaccgGCugGGcGGCGCggGCGUgCCg -3'
miRNA:   3'- gCUUGCACa-------UGugCC-CCGCG--UGCA-GG- -5'
7841 5' -55.3 NC_001973.1 + 6102 0.7 0.784957
Target:  5'- uGAACGUGcGCAUGacGGCGCGCGagggcgCCg -3'
miRNA:   3'- gCUUGCACaUGUGCc-CCGCGUGCa-----GG- -5'
7841 5' -55.3 NC_001973.1 + 140872 0.71 0.775851
Target:  5'- aCGGGCGUGcgcaucUGCGCGGcgucGCGCGCGaCCc -3'
miRNA:   3'- -GCUUGCAC------AUGUGCCc---CGCGUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 6405 0.71 0.775851
Target:  5'- uGAugGccgaGUGCGCGGcGGCGgCGCG-CCg -3'
miRNA:   3'- gCUugCa---CAUGUGCC-CCGC-GUGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 121225 0.71 0.757276
Target:  5'- gCGAGCGcc-ACGCGGcGGCGCggcGCGUCg -3'
miRNA:   3'- -GCUUGCacaUGUGCC-CCGCG---UGCAGg -5'
7841 5' -55.3 NC_001973.1 + 123353 0.71 0.738273
Target:  5'- aCGGACGgccGUuuGCGGGGauCGCACG-CCg -3'
miRNA:   3'- -GCUUGCa--CAugUGCCCC--GCGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.