miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7846 5' -55.7 NC_001973.1 + 80452 0.66 0.932663
Target:  5'- ---cGCgGUcUGGCggCGGUcCGGCGCCa -3'
miRNA:   3'- agaaCGgCA-ACCGgaGCUA-GUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 89338 0.66 0.932663
Target:  5'- aUCUUGaCGaUGGCCUCucucaugaGGUCcAGgGCCu -3'
miRNA:   3'- -AGAACgGCaACCGGAG--------CUAG-UCgCGG- -5'
7846 5' -55.7 NC_001973.1 + 30947 0.66 0.932663
Target:  5'- ---cGCUGgUGGUgUCGGUCGcCGCCu -3'
miRNA:   3'- agaaCGGCaACCGgAGCUAGUcGCGG- -5'
7846 5' -55.7 NC_001973.1 + 133286 0.66 0.932663
Target:  5'- ---gGCCGagaacgcGGCCggCGG-CGGCGCCg -3'
miRNA:   3'- agaaCGGCaa-----CCGGa-GCUaGUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 1970 0.66 0.932663
Target:  5'- ---cG-CGUUGGCUUCGAcgAGCGCa -3'
miRNA:   3'- agaaCgGCAACCGGAGCUagUCGCGg -5'
7846 5' -55.7 NC_001973.1 + 64602 0.66 0.9275
Target:  5'- ---cGcCCGccGGCCcggCGAaagUCGGCGCCg -3'
miRNA:   3'- agaaC-GGCaaCCGGa--GCU---AGUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 67808 0.66 0.9221
Target:  5'- ---gGCCGgUGGCCgggUCGGUCuGCaCCg -3'
miRNA:   3'- agaaCGGCaACCGG---AGCUAGuCGcGG- -5'
7846 5' -55.7 NC_001973.1 + 119432 0.66 0.916461
Target:  5'- --aUGCuCGacGGCCacUCGAUCGccGCGCCc -3'
miRNA:   3'- agaACG-GCaaCCGG--AGCUAGU--CGCGG- -5'
7846 5' -55.7 NC_001973.1 + 158827 0.66 0.916461
Target:  5'- ---aGCCGgcGGCCgagCGcgCGGacgaGCCg -3'
miRNA:   3'- agaaCGGCaaCCGGa--GCuaGUCg---CGG- -5'
7846 5' -55.7 NC_001973.1 + 52852 0.66 0.904474
Target:  5'- ---gGCCGcgcgcGGCCggUCGGUCcagcuGGCGCCg -3'
miRNA:   3'- agaaCGGCaa---CCGG--AGCUAG-----UCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 160107 0.67 0.89813
Target:  5'- cUUUUGgCGcUUGGCCUguuUGAUCAccGUGCCc -3'
miRNA:   3'- -AGAACgGC-AACCGGA---GCUAGU--CGCGG- -5'
7846 5' -55.7 NC_001973.1 + 89017 0.67 0.891556
Target:  5'- -gUUGUCGccgGGCCUaaaguaggaggCGAUCucGCGCCa -3'
miRNA:   3'- agAACGGCaa-CCGGA-----------GCUAGu-CGCGG- -5'
7846 5' -55.7 NC_001973.1 + 53674 0.67 0.884755
Target:  5'- cUUUGCUGgcgcgucUGGCgUUGcgauUCGGCGCCg -3'
miRNA:   3'- aGAACGGCa------ACCGgAGCu---AGUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 101019 0.67 0.877731
Target:  5'- --cUGCCcUUGGCgccgcuCUCGAUgAGCGCg -3'
miRNA:   3'- agaACGGcAACCG------GAGCUAgUCGCGg -5'
7846 5' -55.7 NC_001973.1 + 5033 0.67 0.87049
Target:  5'- uUCUcUGCUGUcGGCgUUGAgaaagcgCAGCGUCa -3'
miRNA:   3'- -AGA-ACGGCAaCCGgAGCUa------GUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 81181 0.67 0.87049
Target:  5'- gUCggGUCGgcGGCggCGAcgguguuggUCAGCGCCa -3'
miRNA:   3'- -AGaaCGGCaaCCGgaGCU---------AGUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 37698 0.67 0.87049
Target:  5'- aUCggcCCGUUGcGCaCUCGAcgGGCGCCc -3'
miRNA:   3'- -AGaacGGCAAC-CG-GAGCUagUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 122599 0.68 0.863035
Target:  5'- cUUUGCUGcggcggaGGCgUCGG-CGGCGCCg -3'
miRNA:   3'- aGAACGGCaa-----CCGgAGCUaGUCGCGG- -5'
7846 5' -55.7 NC_001973.1 + 57764 0.68 0.855373
Target:  5'- ---aGCCgGUUGGCggcguugauCUCGAUCGccGUGCCg -3'
miRNA:   3'- agaaCGG-CAACCG---------GAGCUAGU--CGCGG- -5'
7846 5' -55.7 NC_001973.1 + 82781 0.68 0.847509
Target:  5'- ---cGCCGagUUGGuCCUCGA--GGCGCUg -3'
miRNA:   3'- agaaCGGC--AACC-GGAGCUagUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.