miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7849 3' -57.8 NC_001973.1 + 3173 0.67 0.817853
Target:  5'- --aCGAGGcGCuGCGGCUcgugucggaggucgCGGCCGCCg -3'
miRNA:   3'- cuaGCUCCuCG-CGUCGGa-------------GCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 64728 0.67 0.814451
Target:  5'- cGUUGAGGAugGUGC-GCCUCGugCAg- -3'
miRNA:   3'- cUAGCUCCU--CGCGuCGGAGCugGUgg -5'
7849 3' -57.8 NC_001973.1 + 109290 0.67 0.814451
Target:  5'- --gCGAGGAcCGCuucguGCCgcacCGACCGCUg -3'
miRNA:   3'- cuaGCUCCUcGCGu----CGGa---GCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 153970 0.67 0.814451
Target:  5'- uGGUCGAGcgcgaguuGAGUcCGGCgCgcgCGACCGCCg -3'
miRNA:   3'- -CUAGCUC--------CUCGcGUCG-Ga--GCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 2312 0.67 0.814451
Target:  5'- --gCGAGGAGUcCAGCUgaagcCGGCgACCg -3'
miRNA:   3'- cuaGCUCCUCGcGUCGGa----GCUGgUGG- -5'
7849 3' -57.8 NC_001973.1 + 48978 0.67 0.805834
Target:  5'- aAUCGAGGGcaCGC-GUCUCGACCaguggACCa -3'
miRNA:   3'- cUAGCUCCUc-GCGuCGGAGCUGG-----UGG- -5'
7849 3' -57.8 NC_001973.1 + 121666 0.67 0.804964
Target:  5'- cGGUcCGAGGucaccugcucgacGGCGCGcGCCaggUCGGCCGCg -3'
miRNA:   3'- -CUA-GCUCC-------------UCGCGU-CGG---AGCUGGUGg -5'
7849 3' -57.8 NC_001973.1 + 66399 0.67 0.797067
Target:  5'- uGUCGuGGAGCGUguacacgggcgAGCCgggCGACacgGCCu -3'
miRNA:   3'- cUAGCuCCUCGCG-----------UCGGa--GCUGg--UGG- -5'
7849 3' -57.8 NC_001973.1 + 36724 0.67 0.788155
Target:  5'- -cUCGAGcGAGCuGCAcGCCgacgUGGCgGCCg -3'
miRNA:   3'- cuAGCUC-CUCG-CGU-CGGa---GCUGgUGG- -5'
7849 3' -57.8 NC_001973.1 + 45512 0.67 0.779109
Target:  5'- ----uGGGAGCGCGGCUaCGAgaaCCACUa -3'
miRNA:   3'- cuagcUCCUCGCGUCGGaGCU---GGUGG- -5'
7849 3' -57.8 NC_001973.1 + 43563 0.67 0.779109
Target:  5'- --cCGAGGGcCGUaucaugauGGCUUUGGCCGCCg -3'
miRNA:   3'- cuaGCUCCUcGCG--------UCGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 20981 0.67 0.779109
Target:  5'- cAUCGcGGAcGCGCAGCgUC-ACCugCu -3'
miRNA:   3'- cUAGCuCCU-CGCGUCGgAGcUGGugG- -5'
7849 3' -57.8 NC_001973.1 + 25120 0.68 0.769935
Target:  5'- ---aGAGcGGGCGCGGCgaUGGCgCGCCa -3'
miRNA:   3'- cuagCUC-CUCGCGUCGgaGCUG-GUGG- -5'
7849 3' -57.8 NC_001973.1 + 98639 0.68 0.769011
Target:  5'- --cCGAGGAGCGCgacgugcGGCUgcgCGACgACg -3'
miRNA:   3'- cuaGCUCCUCGCG-------UCGGa--GCUGgUGg -5'
7849 3' -57.8 NC_001973.1 + 134479 0.68 0.767159
Target:  5'- aGUCGcGGGcgaucacggccaccAGCGgaaccuugcaGGCCUCGACCGCCu -3'
miRNA:   3'- cUAGC-UCC--------------UCGCg---------UCGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 83402 0.68 0.760643
Target:  5'- -uUCGAGcGAGCGUucGagUUGGCCACCg -3'
miRNA:   3'- cuAGCUC-CUCGCGu-CggAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 26193 0.68 0.760643
Target:  5'- -cUUGGGcuggcaGAGCacGCAGCCUCGGCCGUCg -3'
miRNA:   3'- cuAGCUC------CUCG--CGUCGGAGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 101987 0.68 0.760643
Target:  5'- aGGUgGAGGuGCGCAacgugugccGCUUCGugCuGCCg -3'
miRNA:   3'- -CUAgCUCCuCGCGU---------CGGAGCugG-UGG- -5'
7849 3' -57.8 NC_001973.1 + 40109 0.68 0.760643
Target:  5'- -uUUGucGAGCGCGGUCUgcaCGGCgGCCa -3'
miRNA:   3'- cuAGCucCUCGCGUCGGA---GCUGgUGG- -5'
7849 3' -57.8 NC_001973.1 + 29860 0.68 0.741738
Target:  5'- -uUCGAGG-GCGUgccccuugAGcCCUCG-CCGCCu -3'
miRNA:   3'- cuAGCUCCuCGCG--------UC-GGAGCuGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.