miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7850 5' -50.3 NC_001973.1 + 18574 0.66 0.998867
Target:  5'- aUGGUGUGCaUAAuCGAucggcccuCGAUCAUGCg -3'
miRNA:   3'- gGCCGCAUG-AUUuGCU--------GCUAGUGCGg -5'
7850 5' -50.3 NC_001973.1 + 107696 0.66 0.998867
Target:  5'- gCCGGUcccACUGcucucgaaagucGACGGCGAcgACGCCc -3'
miRNA:   3'- -GGCCGca-UGAU------------UUGCUGCUagUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 86762 0.66 0.998867
Target:  5'- gCCGGCGccgUGCguu-CGGCacgGAUCGCccGCCa -3'
miRNA:   3'- -GGCCGC---AUGauuuGCUG---CUAGUG--CGG- -5'
7850 5' -50.3 NC_001973.1 + 157295 0.66 0.998867
Target:  5'- aCGGgcaCGUGCgaaccGAACcGCGcgCGCGCCc -3'
miRNA:   3'- gGCC---GCAUGa----UUUGcUGCuaGUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 142781 0.66 0.998867
Target:  5'- gUCGGCGcACacggcCGACGAgggcaccaGCGCCa -3'
miRNA:   3'- -GGCCGCaUGauuu-GCUGCUag------UGCGG- -5'
7850 5' -50.3 NC_001973.1 + 78602 0.66 0.998867
Target:  5'- gUCGGCGUAggucauGCG-CGuuaugCGCGCCg -3'
miRNA:   3'- -GGCCGCAUgauu--UGCuGCua---GUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 56435 0.66 0.998867
Target:  5'- gCGGCGcGCgaaaAGACGACGugccUCagaucgagcgcgACGCCg -3'
miRNA:   3'- gGCCGCaUGa---UUUGCUGCu---AG------------UGCGG- -5'
7850 5' -50.3 NC_001973.1 + 98437 0.66 0.998867
Target:  5'- gCGacGCGUcgUGGuCGACGcgCGCGCCg -3'
miRNA:   3'- gGC--CGCAugAUUuGCUGCuaGUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 87348 0.66 0.998867
Target:  5'- cCCGcCGcGCagu-CGACGggCGCGCCg -3'
miRNA:   3'- -GGCcGCaUGauuuGCUGCuaGUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 122692 0.66 0.998846
Target:  5'- gCCGGCG-GCg--GCGACGGcaaaacagacuccUCAaaucCGCCa -3'
miRNA:   3'- -GGCCGCaUGauuUGCUGCU-------------AGU----GCGG- -5'
7850 5' -50.3 NC_001973.1 + 7629 0.66 0.998846
Target:  5'- aCCGG-GUGCaGGAcCGACGcccaaccggguccGUCGCGCg -3'
miRNA:   3'- -GGCCgCAUGaUUU-GCUGC-------------UAGUGCGg -5'
7850 5' -50.3 NC_001973.1 + 74591 0.66 0.998633
Target:  5'- gCGGCGgcgGCgGAA--GCGcgCGCGCCc -3'
miRNA:   3'- gGCCGCa--UGaUUUgcUGCuaGUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 57067 0.66 0.998633
Target:  5'- -gGGCGUGCcguuGCGACGccaGCaGCCu -3'
miRNA:   3'- ggCCGCAUGauu-UGCUGCuagUG-CGG- -5'
7850 5' -50.3 NC_001973.1 + 51310 0.66 0.998633
Target:  5'- aCGGCuUGCgcGAGCGACaGUCuuauuuuuguuGCGCCg -3'
miRNA:   3'- gGCCGcAUGa-UUUGCUGcUAG-----------UGCGG- -5'
7850 5' -50.3 NC_001973.1 + 38441 0.66 0.998633
Target:  5'- gCGGCGg---AGGCGuCGGcgGCGCCg -3'
miRNA:   3'- gGCCGCaugaUUUGCuGCUagUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 34470 0.66 0.998633
Target:  5'- uCC-GCGgGCU---UGGCGAUCACGUCc -3'
miRNA:   3'- -GGcCGCaUGAuuuGCUGCUAGUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 108926 0.66 0.998633
Target:  5'- cUCGGCGUuuUGGuCGaACGA--GCGCCg -3'
miRNA:   3'- -GGCCGCAugAUUuGC-UGCUagUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 79989 0.66 0.998607
Target:  5'- aCgGGCGUGCgcuucAguugggacaggucGAUGGCGuUCGCGCUg -3'
miRNA:   3'- -GgCCGCAUGa----U-------------UUGCUGCuAGUGCGG- -5'
7850 5' -50.3 NC_001973.1 + 53525 0.66 0.998555
Target:  5'- aCGGCGcGCgAGACaAUGAUCguggggcuucgggcGCGCCg -3'
miRNA:   3'- gGCCGCaUGaUUUGcUGCUAG--------------UGCGG- -5'
7850 5' -50.3 NC_001973.1 + 102035 0.66 0.998528
Target:  5'- gCGGCGccgACguguucuuuuccGGCGACGG-CACGCUg -3'
miRNA:   3'- gGCCGCa--UGau----------UUGCUGCUaGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.