miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7853 3' -49.8 NC_001973.1 + 60083 0.66 0.998001
Target:  5'- --cACGUcg-CUCgGCCUCGUCG-CCu -3'
miRNA:   3'- uucUGUAauaGAGgUGGAGCAGCaGG- -5'
7853 3' -49.8 NC_001973.1 + 94004 0.66 0.998001
Target:  5'- gAGGAC-----CUgaACCUCGUCGUCCc -3'
miRNA:   3'- -UUCUGuaauaGAggUGGAGCAGCAGG- -5'
7853 3' -49.8 NC_001973.1 + 3896 0.66 0.998001
Target:  5'- --uGCAggGUCUCCACgUCcaggcucUCGUCCu -3'
miRNA:   3'- uucUGUaaUAGAGGUGgAGc------AGCAGG- -5'
7853 3' -49.8 NC_001973.1 + 5116 0.66 0.997165
Target:  5'- cAAGGCcucGUCgUCCACCcCGUCGgccUCCg -3'
miRNA:   3'- -UUCUGuaaUAG-AGGUGGaGCAGC---AGG- -5'
7853 3' -49.8 NC_001973.1 + 63123 0.66 0.997165
Target:  5'- -uGGCGUUcgcgCUCCuCgUCGUCGUCg -3'
miRNA:   3'- uuCUGUAAua--GAGGuGgAGCAGCAGg -5'
7853 3' -49.8 NC_001973.1 + 47341 0.67 0.996058
Target:  5'- -cGACGc-GUCgCCGCUUCG-CGUCCg -3'
miRNA:   3'- uuCUGUaaUAGaGGUGGAGCaGCAGG- -5'
7853 3' -49.8 NC_001973.1 + 55145 0.67 0.993756
Target:  5'- -uGGCGcUcgC-CCGCCUCGUCGaugCCg -3'
miRNA:   3'- uuCUGUaAuaGaGGUGGAGCAGCa--GG- -5'
7853 3' -49.8 NC_001973.1 + 119648 0.67 0.992785
Target:  5'- cAGGGCGUcuaUGUCgcgcgCCGCCUCcgcGUCGgCCg -3'
miRNA:   3'- -UUCUGUA---AUAGa----GGUGGAG---CAGCaGG- -5'
7853 3' -49.8 NC_001973.1 + 109092 0.67 0.992785
Target:  5'- uGGACAgccacuUgUCCGCCUUGUCGcUCa -3'
miRNA:   3'- uUCUGUaau---AgAGGUGGAGCAGC-AGg -5'
7853 3' -49.8 NC_001973.1 + 20970 0.68 0.990481
Target:  5'- --cGCAgcGUCaCCugCUCGUCGUCa -3'
miRNA:   3'- uucUGUaaUAGaGGugGAGCAGCAGg -5'
7853 3' -49.8 NC_001973.1 + 130097 0.68 0.990481
Target:  5'- uGGugGUgucgGUCgCCGCCUCGcUCG-CCa -3'
miRNA:   3'- uUCugUAa---UAGaGGUGGAGC-AGCaGG- -5'
7853 3' -49.8 NC_001973.1 + 145190 0.68 0.987636
Target:  5'- ---cCAgu-UUUCUugCUCGUCGUCCu -3'
miRNA:   3'- uucuGUaauAGAGGugGAGCAGCAGG- -5'
7853 3' -49.8 NC_001973.1 + 103440 0.69 0.980023
Target:  5'- -cGGCu---UCUCCGgCUCGUCGgCCa -3'
miRNA:   3'- uuCUGuaauAGAGGUgGAGCAGCaGG- -5'
7853 3' -49.8 NC_001973.1 + 123215 0.72 0.926509
Target:  5'- uGGGCGUcGUCgcCCGCgUCGUCGUCg -3'
miRNA:   3'- uUCUGUAaUAGa-GGUGgAGCAGCAGg -5'
7853 3' -49.8 NC_001973.1 + 122772 0.72 0.9149
Target:  5'- cAAGGCGUU---UCCGCCUCGUCGa-- -3'
miRNA:   3'- -UUCUGUAAuagAGGUGGAGCAGCagg -5'
7853 3' -49.8 NC_001973.1 + 39338 0.74 0.858454
Target:  5'- -cGGCGgcGUCgUCguCCUCGUCGUCCc -3'
miRNA:   3'- uuCUGUaaUAG-AGguGGAGCAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.