miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7853 5' -61.4 NC_001973.1 + 25942 0.66 0.75368
Target:  5'- cGUGGuGGuCCGACagucgGGGGUGacUGGCGAg -3'
miRNA:   3'- -CGCCuCC-GGCUG-----CCCCACcuGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 53682 0.66 0.744567
Target:  5'- gGCGucGGCCGAgacgaggaCGaGGaGGACGACGAg -3'
miRNA:   3'- -CGCcuCCGGCU--------GCcCCaCCUGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 25150 0.66 0.744567
Target:  5'- aGCGGcGGUCG-CGGGccGGACGAUc- -3'
miRNA:   3'- -CGCCuCCGGCuGCCCcaCCUGCUGcu -5'
7853 5' -61.4 NC_001973.1 + 64465 0.66 0.735366
Target:  5'- cGCGGuGG-CGGCGGcGcUGG-CGACGAc -3'
miRNA:   3'- -CGCCuCCgGCUGCC-CcACCuGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 38502 0.66 0.707316
Target:  5'- gGCGGcGGcGCUGGUGGuGGUGGugGugGu -3'
miRNA:   3'- -CGCC-UC-CGGCUGCC-CCACCugCugCu -5'
7853 5' -61.4 NC_001973.1 + 28603 0.67 0.688319
Target:  5'- gGUGGAGgcGCCGGCGGGGc--GCGGCc- -3'
miRNA:   3'- -CGCCUC--CGGCUGCCCCaccUGCUGcu -5'
7853 5' -61.4 NC_001973.1 + 138649 0.67 0.678755
Target:  5'- aCGGcGGUCGcGCuGGGGgauggGGACGACGc -3'
miRNA:   3'- cGCCuCCGGC-UG-CCCCa----CCUGCUGCu -5'
7853 5' -61.4 NC_001973.1 + 64294 0.67 0.669156
Target:  5'- cCGGAGcGCCGGCGa-GUcGGGCGGCGu -3'
miRNA:   3'- cGCCUC-CGGCUGCccCA-CCUGCUGCu -5'
7853 5' -61.4 NC_001973.1 + 130672 0.68 0.611247
Target:  5'- cGCGGcgacucgggugcGGGCCGGCGcGGcgGcGGCGGCGGa -3'
miRNA:   3'- -CGCC------------UCCGGCUGCcCCa-C-CUGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 79203 0.69 0.572829
Target:  5'- aGCucAGGUCGACGGGGUcgucGGGCGAguaGAa -3'
miRNA:   3'- -CGccUCCGGCUGCCCCA----CCUGCUg--CU- -5'
7853 5' -61.4 NC_001973.1 + 39812 0.69 0.563304
Target:  5'- cGCGGcGGCgCGGCGcgucgcagaacaGGGUGG-CGACGc -3'
miRNA:   3'- -CGCCuCCG-GCUGC------------CCCACCuGCUGCu -5'
7853 5' -61.4 NC_001973.1 + 146691 0.69 0.535005
Target:  5'- cGUGGucggcguGGUCGACGGGGc--GCGGCGAg -3'
miRNA:   3'- -CGCCu------CCGGCUGCCCCaccUGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 82613 0.69 0.535005
Target:  5'- -aGGAGGCCGGCGuGGaGaUGGACcGGCc- -3'
miRNA:   3'- cgCCUCCGGCUGC-CC-C-ACCUG-CUGcu -5'
7853 5' -61.4 NC_001973.1 + 43531 0.71 0.472067
Target:  5'- gGCGGcgcguagacuuccacGGCgGugGGGGUgucguccgacgcGGACGACGAc -3'
miRNA:   3'- -CGCCu--------------CCGgCugCCCCA------------CCUGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 122213 0.71 0.462373
Target:  5'- gGCGGAGG-CGGCGGcGGcgaGGGCGcggGCGAa -3'
miRNA:   3'- -CGCCUCCgGCUGCC-CCa--CCUGC---UGCU- -5'
7853 5' -61.4 NC_001973.1 + 5094 0.71 0.453653
Target:  5'- uCGGccuccGCCGA-GGuGGUGGACGACGAg -3'
miRNA:   3'- cGCCuc---CGGCUgCC-CCACCUGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 86263 0.71 0.445022
Target:  5'- uUGGugcGGUCGcCGGGGUGGGCGcgcacGCGAg -3'
miRNA:   3'- cGCCu--CCGGCuGCCCCACCUGC-----UGCU- -5'
7853 5' -61.4 NC_001973.1 + 125374 0.73 0.364151
Target:  5'- aCGGcgcGGCCGACGGcggcgcGGUGG-CGGCGAu -3'
miRNA:   3'- cGCCu--CCGGCUGCC------CCACCuGCUGCU- -5'
7853 5' -61.4 NC_001973.1 + 8667 0.74 0.313904
Target:  5'- cCGGAcGGCCGGCGcGGGcGGGCG-CGGg -3'
miRNA:   3'- cGCCU-CCGGCUGC-CCCaCCUGCuGCU- -5'
7853 5' -61.4 NC_001973.1 + 132091 0.75 0.251514
Target:  5'- aGCGGGGGCCGGCaGuc-GGGCGGCGAc -3'
miRNA:   3'- -CGCCUCCGGCUGcCccaCCUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.