miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
786 5' -49.6 NC_000852.3 + 99168 0.66 0.999957
Target:  5'- gGGCCUcgGAUc--GCCa--GACGAGGg -3'
miRNA:   3'- -CCGGAuaCUGuucCGGauaCUGUUCC- -5'
786 5' -49.6 NC_000852.3 + 98927 0.66 0.999944
Target:  5'- cGGCCgggaaGACccaguuuguaGAGGCacuUGACAAGGc -3'
miRNA:   3'- -CCGGaua--CUG----------UUCCGgauACUGUUCC- -5'
786 5' -49.6 NC_000852.3 + 29244 0.66 0.999905
Target:  5'- aGGgCUAUGGCAGuuGGuUCUAUGGucgcCAGGGg -3'
miRNA:   3'- -CCgGAUACUGUU--CC-GGAUACU----GUUCC- -5'
786 5' -49.6 NC_000852.3 + 142818 0.66 0.999877
Target:  5'- -cCCUAUGuuGAGGUCgcaaAUGugGGGGg -3'
miRNA:   3'- ccGGAUACugUUCCGGa---UACugUUCC- -5'
786 5' -49.6 NC_000852.3 + 40666 0.68 0.999402
Target:  5'- uGGCCUA--ACGauGGGCCUGUGAauaccGGu -3'
miRNA:   3'- -CCGGAUacUGU--UCCGGAUACUguu--CC- -5'
786 5' -49.6 NC_000852.3 + 285698 0.74 0.957232
Target:  5'- aGGCCUucauccugguUGACGAaggcguGGCCUAUGACucGGu -3'
miRNA:   3'- -CCGGAu---------ACUGUU------CCGGAUACUGuuCC- -5'
786 5' -49.6 NC_000852.3 + 309937 0.84 0.55691
Target:  5'- nGCCUAUGACAAGGCCUAUGuCu--- -3'
miRNA:   3'- cCGGAUACUGUUCCGGAUACuGuucc -5'
786 5' -49.6 NC_000852.3 + 309912 1.13 0.014308
Target:  5'- aGGCCUAUGACAAGGCCUAUGACAAGGc -3'
miRNA:   3'- -CCGGAUACUGUUCCGGAUACUGUUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.