Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
786 | 5' | -49.6 | NC_000852.3 | + | 99168 | 0.66 | 0.999957 |
Target: 5'- gGGCCUcgGAUc--GCCa--GACGAGGg -3' miRNA: 3'- -CCGGAuaCUGuucCGGauaCUGUUCC- -5' |
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786 | 5' | -49.6 | NC_000852.3 | + | 98927 | 0.66 | 0.999944 |
Target: 5'- cGGCCgggaaGACccaguuuguaGAGGCacuUGACAAGGc -3' miRNA: 3'- -CCGGaua--CUG----------UUCCGgauACUGUUCC- -5' |
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786 | 5' | -49.6 | NC_000852.3 | + | 29244 | 0.66 | 0.999905 |
Target: 5'- aGGgCUAUGGCAGuuGGuUCUAUGGucgcCAGGGg -3' miRNA: 3'- -CCgGAUACUGUU--CC-GGAUACU----GUUCC- -5' |
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786 | 5' | -49.6 | NC_000852.3 | + | 142818 | 0.66 | 0.999877 |
Target: 5'- -cCCUAUGuuGAGGUCgcaaAUGugGGGGg -3' miRNA: 3'- ccGGAUACugUUCCGGa---UACugUUCC- -5' |
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786 | 5' | -49.6 | NC_000852.3 | + | 40666 | 0.68 | 0.999402 |
Target: 5'- uGGCCUA--ACGauGGGCCUGUGAauaccGGu -3' miRNA: 3'- -CCGGAUacUGU--UCCGGAUACUguu--CC- -5' |
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786 | 5' | -49.6 | NC_000852.3 | + | 285698 | 0.74 | 0.957232 |
Target: 5'- aGGCCUucauccugguUGACGAaggcguGGCCUAUGACucGGu -3' miRNA: 3'- -CCGGAu---------ACUGUU------CCGGAUACUGuuCC- -5' |
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786 | 5' | -49.6 | NC_000852.3 | + | 309937 | 0.84 | 0.55691 |
Target: 5'- nGCCUAUGACAAGGCCUAUGuCu--- -3' miRNA: 3'- cCGGAUACUGUUCCGGAUACuGuucc -5' |
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786 | 5' | -49.6 | NC_000852.3 | + | 309912 | 1.13 | 0.014308 |
Target: 5'- aGGCCUAUGACAAGGCCUAUGACAAGGc -3' miRNA: 3'- -CCGGAUACUGUUCCGGAUACUGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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