miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7861 3' -57.9 NC_001973.1 + 115834 0.66 0.868817
Target:  5'- --gGGCGCGAugcggGCCGCgugC-UGCCGGc -3'
miRNA:   3'- uagCCGUGCU-----UGGCGaa-GcACGGCCc -5'
7861 3' -57.9 NC_001973.1 + 48483 0.66 0.868817
Target:  5'- -cCGGCGCGAACaCGCac---GCCGGa -3'
miRNA:   3'- uaGCCGUGCUUG-GCGaagcaCGGCCc -5'
7861 3' -57.9 NC_001973.1 + 21772 0.66 0.861463
Target:  5'- aAUCGGCGCGAGCgGa--CGUGUuuGGa -3'
miRNA:   3'- -UAGCCGUGCUUGgCgaaGCACGgcCC- -5'
7861 3' -57.9 NC_001973.1 + 46627 0.66 0.846167
Target:  5'- -cCGGuCGCGAGCCuGCgcgCGaGCCGGc -3'
miRNA:   3'- uaGCC-GUGCUUGG-CGaa-GCaCGGCCc -5'
7861 3' -57.9 NC_001973.1 + 107639 0.66 0.846167
Target:  5'- -cCGGCACGGGCgGa---GcGCCGGGc -3'
miRNA:   3'- uaGCCGUGCUUGgCgaagCaCGGCCC- -5'
7861 3' -57.9 NC_001973.1 + 153866 0.66 0.838236
Target:  5'- uUCGucaugucCACGGGCgGgUUCGUGCCGGu -3'
miRNA:   3'- uAGCc------GUGCUUGgCgAAGCACGGCCc -5'
7861 3' -57.9 NC_001973.1 + 125483 0.66 0.838236
Target:  5'- -cCGGCgaaGCGAGCCGCgUUC--GCCGGc -3'
miRNA:   3'- uaGCCG---UGCUUGGCG-AAGcaCGGCCc -5'
7861 3' -57.9 NC_001973.1 + 14978 0.66 0.838236
Target:  5'- -gCGGCGcCGAGCCGgcUCGggcggGCgGGGa -3'
miRNA:   3'- uaGCCGU-GCUUGGCgaAGCa----CGgCCC- -5'
7861 3' -57.9 NC_001973.1 + 57108 0.67 0.825177
Target:  5'- -gCGGCGCGGggcguGCCGUcgCGgcgccagcagccuaGCCGGGg -3'
miRNA:   3'- uaGCCGUGCU-----UGGCGaaGCa-------------CGGCCC- -5'
7861 3' -57.9 NC_001973.1 + 93440 0.67 0.813397
Target:  5'- gGUUGGCgGCGGagcuggugccgGCCGCguccgagagCGUGCCGaGGa -3'
miRNA:   3'- -UAGCCG-UGCU-----------UGGCGaa-------GCACGGC-CC- -5'
7861 3' -57.9 NC_001973.1 + 58407 0.67 0.813397
Target:  5'- -aCGGCGCGcgacuggcaAACgCGC-UCGUGCCaGGu -3'
miRNA:   3'- uaGCCGUGC---------UUG-GCGaAGCACGGcCC- -5'
7861 3' -57.9 NC_001973.1 + 115976 0.67 0.808252
Target:  5'- cGUCGaGCGCgucgcagcgcaucucGAACCGCcgCGUGCCGu- -3'
miRNA:   3'- -UAGC-CGUG---------------CUUGGCGaaGCACGGCcc -5'
7861 3' -57.9 NC_001973.1 + 101981 0.67 0.804792
Target:  5'- --aGGUGCGcaacguguGCCGCUUCGUGCUGc- -3'
miRNA:   3'- uagCCGUGCu-------UGGCGAAGCACGGCcc -5'
7861 3' -57.9 NC_001973.1 + 101143 0.67 0.787142
Target:  5'- uGUCGGCcaacGCGAGCCaGCcgCGcGCCGcGGc -3'
miRNA:   3'- -UAGCCG----UGCUUGG-CGaaGCaCGGC-CC- -5'
7861 3' -57.9 NC_001973.1 + 136887 0.68 0.778112
Target:  5'- cUCGGCGCuGGcgcuGCCGCUgCG-GCCGcGGc -3'
miRNA:   3'- uAGCCGUG-CU----UGGCGAaGCaCGGC-CC- -5'
7861 3' -57.9 NC_001973.1 + 132105 0.68 0.768957
Target:  5'- -gCGGCugGGGCgGCagCGgggGCCGGc -3'
miRNA:   3'- uaGCCGugCUUGgCGaaGCa--CGGCCc -5'
7861 3' -57.9 NC_001973.1 + 26935 0.68 0.768957
Target:  5'- -gCGGCACGuagaagUCGUcgUUCGUcGCCGGGc -3'
miRNA:   3'- uaGCCGUGCuu----GGCG--AAGCA-CGGCCC- -5'
7861 3' -57.9 NC_001973.1 + 155114 0.68 0.768957
Target:  5'- gGUCGcgcGCACGAugCGCgaCGcgGCCGGcGg -3'
miRNA:   3'- -UAGC---CGUGCUugGCGaaGCa-CGGCC-C- -5'
7861 3' -57.9 NC_001973.1 + 55321 0.68 0.759685
Target:  5'- --aGGCGCGGcGCCGUUUCGUGuuGc- -3'
miRNA:   3'- uagCCGUGCU-UGGCGAAGCACggCcc -5'
7861 3' -57.9 NC_001973.1 + 110862 0.68 0.740826
Target:  5'- -gCGuGCACGAcuugcucgGCCGUguacgCGUcGCCGGGa -3'
miRNA:   3'- uaGC-CGUGCU--------UGGCGaa---GCA-CGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.