miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7861 5' -56.4 NC_001973.1 + 155569 0.66 0.913501
Target:  5'- uUGCCgcACAACCGGUagaaggcucgaUCGccGCCCgcgCGg -3'
miRNA:   3'- -ACGGguUGUUGGCCA-----------AGCa-CGGGa--GC- -5'
7861 5' -56.4 NC_001973.1 + 142676 0.66 0.907544
Target:  5'- cGCgCAAaacuCGGCCGGcguUUCGccgGCCCUCa -3'
miRNA:   3'- aCGgGUU----GUUGGCC---AAGCa--CGGGAGc -5'
7861 5' -56.4 NC_001973.1 + 57119 0.66 0.907544
Target:  5'- aGCgCGucgucGCGGCgCGGggCGUGCCgUCGc -3'
miRNA:   3'- aCGgGU-----UGUUG-GCCaaGCACGGgAGC- -5'
7861 5' -56.4 NC_001973.1 + 66628 0.66 0.907544
Target:  5'- cGCCCG--GACCGGcggCGUugGCCCgUCGc -3'
miRNA:   3'- aCGGGUugUUGGCCaa-GCA--CGGG-AGC- -5'
7861 5' -56.4 NC_001973.1 + 98322 0.66 0.907544
Target:  5'- uUGCCCAAgucGCCGcGcgUCGUGCUCUa- -3'
miRNA:   3'- -ACGGGUUgu-UGGC-Ca-AGCACGGGAgc -5'
7861 5' -56.4 NC_001973.1 + 112939 0.66 0.888297
Target:  5'- cGCCgAGCAGCCGGUcaaguUUGUuGCCaaggacaUCGc -3'
miRNA:   3'- aCGGgUUGUUGGCCA-----AGCA-CGGg------AGC- -5'
7861 5' -56.4 NC_001973.1 + 73280 0.67 0.87435
Target:  5'- cGCCCAGCAcgcGCCGca-CGcGCCCUgGu -3'
miRNA:   3'- aCGGGUUGU---UGGCcaaGCaCGGGAgC- -5'
7861 5' -56.4 NC_001973.1 + 39713 0.67 0.859552
Target:  5'- aGCucaCCGACAGgCGGUcgcggUCGUGCgcgaCCUCGa -3'
miRNA:   3'- aCG---GGUUGUUgGCCA-----AGCACG----GGAGC- -5'
7861 5' -56.4 NC_001973.1 + 39345 0.67 0.843946
Target:  5'- aGCUCGGCGG-CGGcgUCGUcGUCCUCGu -3'
miRNA:   3'- aCGGGUUGUUgGCCa-AGCA-CGGGAGC- -5'
7861 5' -56.4 NC_001973.1 + 66375 0.68 0.827584
Target:  5'- aGCCgGGCGACaCGGccuaCGUGCuCUUCGg -3'
miRNA:   3'- aCGGgUUGUUG-GCCaa--GCACG-GGAGC- -5'
7861 5' -56.4 NC_001973.1 + 155889 0.68 0.819137
Target:  5'- gGCCCA---GCUGGUUgGUGUCCggcgCGa -3'
miRNA:   3'- aCGGGUuguUGGCCAAgCACGGGa---GC- -5'
7861 5' -56.4 NC_001973.1 + 13999 0.68 0.810523
Target:  5'- -aCCCGGCAcgaAgCGGUUCGUGCCgaUCu -3'
miRNA:   3'- acGGGUUGU---UgGCCAAGCACGGg-AGc -5'
7861 5' -56.4 NC_001973.1 + 17518 0.68 0.810523
Target:  5'- cGCCCGAUgcuGGCCGGcUCGaaGCCUUUGc -3'
miRNA:   3'- aCGGGUUG---UUGGCCaAGCa-CGGGAGC- -5'
7861 5' -56.4 NC_001973.1 + 79594 0.68 0.810523
Target:  5'- aUGCUCGGCGACCGuGUUCaGUugaaaGUUCUCGa -3'
miRNA:   3'- -ACGGGUUGUUGGC-CAAG-CA-----CGGGAGC- -5'
7861 5' -56.4 NC_001973.1 + 7612 0.69 0.765233
Target:  5'- cGCCCA---ACCGGguccgUCGcGCgCCUCGg -3'
miRNA:   3'- aCGGGUuguUGGCCa----AGCaCG-GGAGC- -5'
7861 5' -56.4 NC_001973.1 + 1818 0.69 0.755792
Target:  5'- aGCCCGACAACCcGUuguugUCGccGCCCUa- -3'
miRNA:   3'- aCGGGUUGUUGGcCA-----AGCa-CGGGAgc -5'
7861 5' -56.4 NC_001973.1 + 2405 0.69 0.755792
Target:  5'- cGCCCGACGACCcGUUCG-GCgagaUCGg -3'
miRNA:   3'- aCGGGUUGUUGGcCAAGCaCGgg--AGC- -5'
7861 5' -56.4 NC_001973.1 + 160479 0.7 0.736595
Target:  5'- cGCCCAGCGACgGGcaCGaGCCCgccaCGa -3'
miRNA:   3'- aCGGGUUGUUGgCCaaGCaCGGGa---GC- -5'
7861 5' -56.4 NC_001973.1 + 67295 0.7 0.736595
Target:  5'- cGCCCGGCGACCaGGagCGggccgccGCCgUCGa -3'
miRNA:   3'- aCGGGUUGUUGG-CCaaGCa------CGGgAGC- -5'
7861 5' -56.4 NC_001973.1 + 153860 0.7 0.726858
Target:  5'- aUGUCCAcgGGCgGGUUCGUGCCggUCGa -3'
miRNA:   3'- -ACGGGUugUUGgCCAAGCACGGg-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.