miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7865 3' -57.2 NC_001973.1 + 113318 0.66 0.880249
Target:  5'- aGUCGGuGCuGACGCUgacgcGGCcgCCCGGCg -3'
miRNA:   3'- -UAGUCuCGcUUGCGAa----CUG--GGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 48505 0.66 0.880249
Target:  5'- cUCAGGGCcacguACGCcUGG-CCCGGCg -3'
miRNA:   3'- uAGUCUCGcu---UGCGaACUgGGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 49717 0.66 0.880249
Target:  5'- uUCAcccuGUGGACGCUggugcgcGACCaCCGGCUc -3'
miRNA:   3'- uAGUcu--CGCUUGCGAa------CUGG-GGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 90949 0.66 0.880249
Target:  5'- uUguGcGCGAGCGCgaacGCCUCGGCg -3'
miRNA:   3'- uAguCuCGCUUGCGaac-UGGGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 148778 0.66 0.879546
Target:  5'- -cCAGcucGGCGGACGCguagGAUUuuacgugCCGGCCa -3'
miRNA:   3'- uaGUC---UCGCUUGCGaa--CUGG-------GGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 25122 0.66 0.858245
Target:  5'- -gCAGAGCGGGCGCggcGAUggCGcGCCa -3'
miRNA:   3'- uaGUCUCGCUUGCGaa-CUGggGC-CGG- -5'
7865 3' -57.2 NC_001973.1 + 101515 0.66 0.858245
Target:  5'- --aAGAGaCGAuGCGCUUGGaCgCGGCCa -3'
miRNA:   3'- uagUCUC-GCU-UGCGAACUgGgGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 16523 0.66 0.84256
Target:  5'- cAUCGuGAGCGAagACGCggaGACgCCCgcgcGGCCc -3'
miRNA:   3'- -UAGU-CUCGCU--UGCGaa-CUG-GGG----CCGG- -5'
7865 3' -57.2 NC_001973.1 + 58112 0.66 0.84256
Target:  5'- gAUCAGuuuCGAAgGCgacGACgaCCCGGCCa -3'
miRNA:   3'- -UAGUCuc-GCUUgCGaa-CUG--GGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 133199 0.66 0.84256
Target:  5'- -cCGGuuGGCcGGCGCUggcGGCCgCGGCCg -3'
miRNA:   3'- uaGUC--UCGcUUGCGAa--CUGGgGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 67017 0.67 0.83361
Target:  5'- uUCAGAGCgcugggacugcuGAGCGCggacgauugcgUGGCgcgcugccucacgCCCGGCCu -3'
miRNA:   3'- uAGUCUCG------------CUUGCGa----------ACUG-------------GGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 139504 0.67 0.826124
Target:  5'- cUCGGcGuCGGGCGCgccgUGGUCCCGGCg -3'
miRNA:   3'- uAGUCuC-GCUUGCGa---ACUGGGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 10168 0.67 0.817641
Target:  5'- -cCGGAGCcgGGGCGCguuccacGAgCUCGGCCg -3'
miRNA:   3'- uaGUCUCG--CUUGCGaa-----CUgGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 121117 0.68 0.79483
Target:  5'- -aCAGcaGGCGGACGCgcGagcgcaacucgcgcaGCCCCGGCg -3'
miRNA:   3'- uaGUC--UCGCUUGCGaaC---------------UGGGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 83404 0.68 0.782133
Target:  5'- aGUUcGAGCGAGCGUucgagUUGGCCaccgaCCGGCa -3'
miRNA:   3'- -UAGuCUCGCUUGCG-----AACUGG-----GGCCGg -5'
7865 3' -57.2 NC_001973.1 + 9704 0.68 0.781216
Target:  5'- gGUCAGAuucgagcucgGCGGACGCguagGAUCUuacgcguCGGCCg -3'
miRNA:   3'- -UAGUCU----------CGCUUGCGaa--CUGGG-------GCCGG- -5'
7865 3' -57.2 NC_001973.1 + 26184 0.68 0.772903
Target:  5'- -gCAGAGC--ACGCa--GCCUCGGCCg -3'
miRNA:   3'- uaGUCUCGcuUGCGaacUGGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 20946 0.68 0.772903
Target:  5'- gGUCGauGAGCGAGCGCgcggccgUGAUgCUGGUg -3'
miRNA:   3'- -UAGU--CUCGCUUGCGa------ACUGgGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 74252 0.68 0.754081
Target:  5'- -aCGGaAGCG-ACGCaaacGCCCUGGCCg -3'
miRNA:   3'- uaGUC-UCGCuUGCGaac-UGGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 105201 0.68 0.753128
Target:  5'- --gAGGGCGAGCGC---GCCCgcaacggCGGCCg -3'
miRNA:   3'- uagUCUCGCUUGCGaacUGGG-------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.