miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7865 3' -57.2 NC_001973.1 + 34949 0.77 0.297287
Target:  5'- --gAGAGCGugccGACGCgUGAgCCCGGCCg -3'
miRNA:   3'- uagUCUCGC----UUGCGaACUgGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 39829 0.7 0.655055
Target:  5'- gGUCAGAGCGAGCGCcacgcGGCggCgCGGCg -3'
miRNA:   3'- -UAGUCUCGCUUGCGaa---CUG--GgGCCGg -5'
7865 3' -57.2 NC_001973.1 + 115187 0.7 0.655055
Target:  5'- cGUCGcGGGCGcGCGCU---CCUCGGCCg -3'
miRNA:   3'- -UAGU-CUCGCuUGCGAacuGGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 132636 0.69 0.685342
Target:  5'- cGUCAguGAGC--GCGCUUGgcgGCCgCGGCCg -3'
miRNA:   3'- -UAGU--CUCGcuUGCGAAC---UGGgGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 110270 0.69 0.704337
Target:  5'- uGUUGGAGCGGgccagcaACGCauaGACgCCCGGCUc -3'
miRNA:   3'- -UAGUCUCGCU-------UGCGaa-CUG-GGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 9859 0.69 0.715239
Target:  5'- gGUCAGAGCcGAUGacaucauGCCUCGGCCg -3'
miRNA:   3'- -UAGUCUCGcUUGCgaac---UGGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 104975 0.69 0.725077
Target:  5'- cUCGGAGCcuGAGCGCUcUGAgCCuucgcucacauCGGCCu -3'
miRNA:   3'- uAGUCUCG--CUUGCGA-ACUgGG-----------GCCGG- -5'
7865 3' -57.2 NC_001973.1 + 119989 0.69 0.725077
Target:  5'- cAUCGG-GCuuGAACcCgaucGACCCCGGCCg -3'
miRNA:   3'- -UAGUCuCG--CUUGcGaa--CUGGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 158799 0.68 0.744507
Target:  5'- -aUAGAGCGggUcgcccuGCUUGGCCaaGGCg -3'
miRNA:   3'- uaGUCUCGCuuG------CGAACUGGggCCGg -5'
7865 3' -57.2 NC_001973.1 + 105201 0.68 0.753128
Target:  5'- --gAGGGCGAGCGC---GCCCgcaacggCGGCCg -3'
miRNA:   3'- uagUCUCGCUUGCGaacUGGG-------GCCGG- -5'
7865 3' -57.2 NC_001973.1 + 74252 0.68 0.754081
Target:  5'- -aCGGaAGCG-ACGCaaacGCCCUGGCCg -3'
miRNA:   3'- uaGUC-UCGCuUGCGaac-UGGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 20946 0.68 0.772903
Target:  5'- gGUCGauGAGCGAGCGCgcggccgUGAUgCUGGUg -3'
miRNA:   3'- -UAGU--CUCGCUUGCGa------ACUGgGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 26184 0.68 0.772903
Target:  5'- -gCAGAGC--ACGCa--GCCUCGGCCg -3'
miRNA:   3'- uaGUCUCGcuUGCGaacUGGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 9704 0.68 0.781216
Target:  5'- gGUCAGAuucgagcucgGCGGACGCguagGAUCUuacgcguCGGCCg -3'
miRNA:   3'- -UAGUCU----------CGCUUGCGaa--CUGGG-------GCCGG- -5'
7865 3' -57.2 NC_001973.1 + 83404 0.68 0.782133
Target:  5'- aGUUcGAGCGAGCGUucgagUUGGCCaccgaCCGGCa -3'
miRNA:   3'- -UAGuCUCGCUUGCG-----AACUGG-----GGCCGg -5'
7865 3' -57.2 NC_001973.1 + 121117 0.68 0.79483
Target:  5'- -aCAGcaGGCGGACGCgcGagcgcaacucgcgcaGCCCCGGCg -3'
miRNA:   3'- uaGUC--UCGCUUGCGaaC---------------UGGGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 10168 0.67 0.817641
Target:  5'- -cCGGAGCcgGGGCGCguuccacGAgCUCGGCCg -3'
miRNA:   3'- uaGUCUCG--CUUGCGaa-----CUgGGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 139504 0.67 0.826124
Target:  5'- cUCGGcGuCGGGCGCgccgUGGUCCCGGCg -3'
miRNA:   3'- uAGUCuC-GCUUGCGa---ACUGGGGCCGg -5'
7865 3' -57.2 NC_001973.1 + 67017 0.67 0.83361
Target:  5'- uUCAGAGCgcugggacugcuGAGCGCggacgauugcgUGGCgcgcugccucacgCCCGGCCu -3'
miRNA:   3'- uAGUCUCG------------CUUGCGa----------ACUG-------------GGGCCGG- -5'
7865 3' -57.2 NC_001973.1 + 58112 0.66 0.84256
Target:  5'- gAUCAGuuuCGAAgGCgacGACgaCCCGGCCa -3'
miRNA:   3'- -UAGUCuc-GCUUgCGaa-CUG--GGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.