miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7865 5' -64.8 NC_001973.1 + 49550 0.66 0.549882
Target:  5'- gCCGGCgcgCGacaacuGCGCCGCGGUCgaCGGCg-- -3'
miRNA:   3'- -GGCCGa--GU------CGCGGCGCCGG--GCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 78146 0.66 0.549882
Target:  5'- cCCG--UC-GCGCCGcCGcGCCCGACCg- -3'
miRNA:   3'- -GGCcgAGuCGCGGC-GC-CGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 58560 0.66 0.540488
Target:  5'- aCgGGCUCGcCGacaCGCGGCCCuucuucGACCg- -3'
miRNA:   3'- -GgCCGAGUcGCg--GCGCCGGG------CUGGaa -5'
7865 5' -64.8 NC_001973.1 + 135322 0.66 0.540488
Target:  5'- gCC-GC-CcGCGCCGcCGGCgCGGCCUUa -3'
miRNA:   3'- -GGcCGaGuCGCGGC-GCCGgGCUGGAA- -5'
7865 5' -64.8 NC_001973.1 + 22276 0.66 0.536746
Target:  5'- cCCGGCcgcgaacugcccgaUCAGCcggagucgcucuuGgCGCGaGCCCGACCc- -3'
miRNA:   3'- -GGCCG--------------AGUCG-------------CgGCGC-CGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 86765 0.66 0.531149
Target:  5'- gUGGC-CGGCGCCGUGcGUUCGGCa-- -3'
miRNA:   3'- gGCCGaGUCGCGGCGC-CGGGCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 155391 0.66 0.530218
Target:  5'- aCCGGCUgCGcucgcgcguuuucGCGUCGCuGCCCGcCCg- -3'
miRNA:   3'- -GGCCGA-GU-------------CGCGGCGcCGGGCuGGaa -5'
7865 5' -64.8 NC_001973.1 + 122706 0.66 0.521868
Target:  5'- gCGGCgUCAGUGCCGCcGGCggCGGCg-- -3'
miRNA:   3'- gGCCG-AGUCGCGGCG-CCGg-GCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 55321 0.66 0.521868
Target:  5'- -aGGCgCGGCGCCGUuucguguuGCUCGACCa- -3'
miRNA:   3'- ggCCGaGUCGCGGCGc-------CGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 136892 0.66 0.521868
Target:  5'- cCCGcCUCGGCGCUggcgcugccgcuGCGGCCgCGGCg-- -3'
miRNA:   3'- -GGCcGAGUCGCGG------------CGCCGG-GCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 107529 0.66 0.521868
Target:  5'- aCGGC-C-GCGCCGUcgGGCCUGuACCa- -3'
miRNA:   3'- gGCCGaGuCGCGGCG--CCGGGC-UGGaa -5'
7865 5' -64.8 NC_001973.1 + 120582 0.66 0.519096
Target:  5'- gCCGGCguugCGauugaaaucgacgcGCGUCaGCGGCCUGAUCa- -3'
miRNA:   3'- -GGCCGa---GU--------------CGCGG-CGCCGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 22550 0.66 0.51633
Target:  5'- aCCGGCUUcaagguGCGCgaaaagaacuugaacCGCGaGCCCG-CCUUg -3'
miRNA:   3'- -GGCCGAGu-----CGCG---------------GCGC-CGGGCuGGAA- -5'
7865 5' -64.8 NC_001973.1 + 23171 0.66 0.512652
Target:  5'- gCGG-UCAGgGCCGCgucggcgaGGCCCGAgugcaCCUUg -3'
miRNA:   3'- gGCCgAGUCgCGGCG--------CCGGGCU-----GGAA- -5'
7865 5' -64.8 NC_001973.1 + 114957 0.66 0.512652
Target:  5'- gUGGCUCGuGCGCUaCGGCCgCGugCc- -3'
miRNA:   3'- gGCCGAGU-CGCGGcGCCGG-GCugGaa -5'
7865 5' -64.8 NC_001973.1 + 51866 0.66 0.512652
Target:  5'- gCGcGCUCGccgagcGCGCCGCGcagccggcccaGCUCGGCCUc -3'
miRNA:   3'- gGC-CGAGU------CGCGGCGC-----------CGGGCUGGAa -5'
7865 5' -64.8 NC_001973.1 + 37814 0.66 0.512652
Target:  5'- uCCGGCUCGGCGucCCGCcGUugcgucaacagaUCGACCg- -3'
miRNA:   3'- -GGCCGAGUCGC--GGCGcCG------------GGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 66642 0.66 0.512652
Target:  5'- gCGGCccgCGGCGCCGC--CCgGACCg- -3'
miRNA:   3'- gGCCGa--GUCGCGGCGccGGgCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 86696 0.66 0.494425
Target:  5'- gCCGGCggcgCAGCGgcgcaCCGCcGUCUGGCCg- -3'
miRNA:   3'- -GGCCGa---GUCGC-----GGCGcCGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 152842 0.66 0.494425
Target:  5'- aCC-GCUUGGCGCCGCuGGgCCG-CCa- -3'
miRNA:   3'- -GGcCGAGUCGCGGCG-CCgGGCuGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.