miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7865 5' -64.8 NC_001973.1 + 91731 0.77 0.111085
Target:  5'- gCCGGCUCGugcagagcuuGCGCCagcaaGCGGUCCGGCCg- -3'
miRNA:   3'- -GGCCGAGU----------CGCGG-----CGCCGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 139572 0.75 0.156311
Target:  5'- -aGGCUCAccucggugagcGCGUCGCGGCCCG-CCg- -3'
miRNA:   3'- ggCCGAGU-----------CGCGGCGCCGGGCuGGaa -5'
7865 5' -64.8 NC_001973.1 + 133200 0.74 0.163996
Target:  5'- cCCGGUUggcCGGCGCUgGCGGCCgCGGCCg- -3'
miRNA:   3'- -GGCCGA---GUCGCGG-CGCCGG-GCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 107191 0.73 0.207697
Target:  5'- cCCGGCggcggCGGCGCCgccgagcgcgGCGGCCgUGGCCg- -3'
miRNA:   3'- -GGCCGa----GUCGCGG----------CGCCGG-GCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 37054 0.72 0.217565
Target:  5'- aCGGCga--CGUCGCGGCCUGACCa- -3'
miRNA:   3'- gGCCGagucGCGGCGCCGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 56784 0.72 0.222648
Target:  5'- uUCGGCggCGGCGCCGCcGCCgGGCUg- -3'
miRNA:   3'- -GGCCGa-GUCGCGGCGcCGGgCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 27781 0.72 0.237961
Target:  5'- uCCaGCUCGGCcucgGCCGCGGCCgagaacgCGGCCg- -3'
miRNA:   3'- -GGcCGAGUCG----CGGCGCCGG-------GCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 131074 0.72 0.247902
Target:  5'- gCCGGCUCGGUGgugggcgcguauauCUGCGaGCCCGACg-- -3'
miRNA:   3'- -GGCCGAGUCGC--------------GGCGC-CGGGCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 77281 0.72 0.247902
Target:  5'- aCCGcGCgCAGCGCgaccucgagucgguCGCGGCCCGGCaCUc -3'
miRNA:   3'- -GGC-CGaGUCGCG--------------GCGCCGGGCUG-GAa -5'
7865 5' -64.8 NC_001973.1 + 137120 0.71 0.255294
Target:  5'- gCGGCUCGacuGCGCCGCGGUcgUCGGCa-- -3'
miRNA:   3'- gGCCGAGU---CGCGGCGCCG--GGCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 153781 0.71 0.279173
Target:  5'- gCgGGCUCGGCGCgCgGCGcGCCCGcuACCg- -3'
miRNA:   3'- -GgCCGAGUCGCG-G-CGC-CGGGC--UGGaa -5'
7865 5' -64.8 NC_001973.1 + 65285 0.7 0.291124
Target:  5'- aUCGuGCUCGGCGUggccauguacgggCGCGGCUgGACCg- -3'
miRNA:   3'- -GGC-CGAGUCGCG-------------GCGCCGGgCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 39200 0.7 0.291764
Target:  5'- aCCGGuUUCGGcCGCCGCGacGCCCG-CCa- -3'
miRNA:   3'- -GGCC-GAGUC-GCGGCGC--CGGGCuGGaa -5'
7865 5' -64.8 NC_001973.1 + 139504 0.7 0.291764
Target:  5'- cUCGGCgUCGggcGCGCCGUGGuCCCGGCg-- -3'
miRNA:   3'- -GGCCG-AGU---CGCGGCGCC-GGGCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 64287 0.7 0.291764
Target:  5'- gCCGGCgagucgggCGGCGUgGCGGCCaacgCGGCCc- -3'
miRNA:   3'- -GGCCGa-------GUCGCGgCGCCGG----GCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 104683 0.7 0.311477
Target:  5'- cCCGaCUCGGCGCCGCG-CUCGGCg-- -3'
miRNA:   3'- -GGCcGAGUCGCGGCGCcGGGCUGgaa -5'
7865 5' -64.8 NC_001973.1 + 36247 0.7 0.325172
Target:  5'- gCCGGCg-AGgGCCGgGGCCuCGAUCg- -3'
miRNA:   3'- -GGCCGagUCgCGGCgCCGG-GCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 75904 0.7 0.325172
Target:  5'- aCC-GCUCGGCguucuGCUGCGcGCCCGACUg- -3'
miRNA:   3'- -GGcCGAGUCG-----CGGCGC-CGGGCUGGaa -5'
7865 5' -64.8 NC_001973.1 + 125996 0.7 0.325172
Target:  5'- gCGGCgCAGUucgauuuccGCCGCGGCgCCGACgUg -3'
miRNA:   3'- gGCCGaGUCG---------CGGCGCCG-GGCUGgAa -5'
7865 5' -64.8 NC_001973.1 + 116450 0.7 0.332185
Target:  5'- gCGGCggCGGCGagCGggcuCGGCCCGACCg- -3'
miRNA:   3'- gGCCGa-GUCGCg-GC----GCCGGGCUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.