miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7879 3' -54.3 NC_001973.1 + 100614 0.66 0.956666
Target:  5'- cGCGCUCAaaaauACGGGCAGcGUCGUG-GGc- -3'
miRNA:   3'- -CGCGGGU-----UGCUUGUC-UAGCACgCCua -5'
7879 3' -54.3 NC_001973.1 + 73173 0.66 0.951917
Target:  5'- cGCGUCCucguaGGCGAACGGAUCGaacagaggcuucGCGGu- -3'
miRNA:   3'- -CGCGGG-----UUGCUUGUCUAGCa-----------CGCCua -5'
7879 3' -54.3 NC_001973.1 + 138695 0.66 0.948563
Target:  5'- aCGUCUuccGCGGACAGGccugCGUGCGGu- -3'
miRNA:   3'- cGCGGGu--UGCUUGUCUa---GCACGCCua -5'
7879 3' -54.3 NC_001973.1 + 131723 0.66 0.944158
Target:  5'- -gGCCCGGCGAucgucaACAG-UCG-GUGGAa -3'
miRNA:   3'- cgCGGGUUGCU------UGUCuAGCaCGCCUa -5'
7879 3' -54.3 NC_001973.1 + 9748 0.66 0.944158
Target:  5'- uGCGCCCAugcaaACGGAUAGGcgaUCGUuuuauaGCGGc- -3'
miRNA:   3'- -CGCGGGU-----UGCUUGUCU---AGCA------CGCCua -5'
7879 3' -54.3 NC_001973.1 + 111228 0.67 0.93158
Target:  5'- aUGCCCGugcagagcuacacggGCGAGgGGGUCGacGCGGAc -3'
miRNA:   3'- cGCGGGU---------------UGCUUgUCUAGCa-CGCCUa -5'
7879 3' -54.3 NC_001973.1 + 69741 0.67 0.929499
Target:  5'- cGCGUCgAGCGAGCAcucguauugCGUGCGGu- -3'
miRNA:   3'- -CGCGGgUUGCUUGUcua------GCACGCCua -5'
7879 3' -54.3 NC_001973.1 + 32077 0.67 0.929499
Target:  5'- -aGCCCAGCGAGaAGGUgGgcGCGGGc -3'
miRNA:   3'- cgCGGGUUGCUUgUCUAgCa-CGCCUa -5'
7879 3' -54.3 NC_001973.1 + 144452 0.67 0.924126
Target:  5'- cGCGCgCGuguCGGGCGG--CGUGCGGGa -3'
miRNA:   3'- -CGCGgGUu--GCUUGUCuaGCACGCCUa -5'
7879 3' -54.3 NC_001973.1 + 142427 0.67 0.912652
Target:  5'- cGUGCCCGGCGAGCcGAUCGUc----- -3'
miRNA:   3'- -CGCGGGUUGCUUGuCUAGCAcgccua -5'
7879 3' -54.3 NC_001973.1 + 61101 0.67 0.912652
Target:  5'- cGCGgCCGACgGAGCAGcggCG-GCGGGg -3'
miRNA:   3'- -CGCgGGUUG-CUUGUCua-GCaCGCCUa -5'
7879 3' -54.3 NC_001973.1 + 137030 0.68 0.893636
Target:  5'- aGCGCCUuuugcacCGGucGCAGGUCGUGCGc-- -3'
miRNA:   3'- -CGCGGGuu-----GCU--UGUCUAGCACGCcua -5'
7879 3' -54.3 NC_001973.1 + 158640 0.68 0.886827
Target:  5'- cGCGCCCGACGAcccguucgGCgAGAUCGgGCa--- -3'
miRNA:   3'- -CGCGGGUUGCU--------UG-UCUAGCaCGccua -5'
7879 3' -54.3 NC_001973.1 + 63757 0.69 0.849444
Target:  5'- gGCGCCacuACGAGCGGAUCaagaacgagGUGGAc -3'
miRNA:   3'- -CGCGGgu-UGCUUGUCUAGca-------CGCCUa -5'
7879 3' -54.3 NC_001973.1 + 38477 0.69 0.849444
Target:  5'- aGCGagaaaCaGACGGACAGGUCGgcgcGCGGAUu -3'
miRNA:   3'- -CGCg----GgUUGCUUGUCUAGCa---CGCCUA- -5'
7879 3' -54.3 NC_001973.1 + 81595 0.69 0.833042
Target:  5'- uGCGUgaccacguucaCCGGCG-ACAGGUCGUaGCGGGc -3'
miRNA:   3'- -CGCG-----------GGUUGCuUGUCUAGCA-CGCCUa -5'
7879 3' -54.3 NC_001973.1 + 103861 0.7 0.807063
Target:  5'- uCGgCCGcCGAGgAGAUCGUGCGGc- -3'
miRNA:   3'- cGCgGGUuGCUUgUCUAGCACGCCua -5'
7879 3' -54.3 NC_001973.1 + 95746 0.71 0.760656
Target:  5'- cGCGCCCGcCGAcaAGAUCGUGCu--- -3'
miRNA:   3'- -CGCGGGUuGCUugUCUAGCACGccua -5'
7879 3' -54.3 NC_001973.1 + 90452 0.71 0.760656
Target:  5'- uCGCgCCAACGAAcCGGAUCGUuuuuucugaacGCGGGc -3'
miRNA:   3'- cGCG-GGUUGCUU-GUCUAGCA-----------CGCCUa -5'
7879 3' -54.3 NC_001973.1 + 22667 0.71 0.741216
Target:  5'- cGCGgCCAGCGAguuuguggugacGCAGA-CGUGCGuGAg -3'
miRNA:   3'- -CGCgGGUUGCU------------UGUCUaGCACGC-CUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.