miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7879 5' -58 NC_001973.1 + 8193 0.66 0.865073
Target:  5'- cGCGCCgacggcacCGCUUGGCGccGCUGggcCGCCa -3'
miRNA:   3'- -CGUGGau------GCGGGUCGC--CGACaa-GCGG- -5'
7879 5' -58 NC_001973.1 + 101605 0.66 0.865073
Target:  5'- aGCGCCgaaugcuCGCCUugGGCGGCacgaucucGUuggCGCCg -3'
miRNA:   3'- -CGUGGau-----GCGGG--UCGCCGa-------CAa--GCGG- -5'
7879 5' -58 NC_001973.1 + 80280 0.66 0.865073
Target:  5'- cGCGCUUGaucagccaGCCCuuguacuuGGUGcGCUGUUCGUUg -3'
miRNA:   3'- -CGUGGAUg-------CGGG--------UCGC-CGACAAGCGG- -5'
7879 5' -58 NC_001973.1 + 74250 0.66 0.865073
Target:  5'- uGCGCCUGC-CCgauguCGGCGGUgauguacgUGUggccggCGCCg -3'
miRNA:   3'- -CGUGGAUGcGG-----GUCGCCG--------ACAa-----GCGG- -5'
7879 5' -58 NC_001973.1 + 31962 0.66 0.865073
Target:  5'- aGCACgUaGCGCaCCucgGGCUGcgCGCCg -3'
miRNA:   3'- -CGUGgA-UGCG-GGucgCCGACaaGCGG- -5'
7879 5' -58 NC_001973.1 + 113403 0.66 0.864335
Target:  5'- cGCACCUGgGCUugacgggCAGCGGCg---UGCa -3'
miRNA:   3'- -CGUGGAUgCGG-------GUCGCCGacaaGCGg -5'
7879 5' -58 NC_001973.1 + 28397 0.66 0.860614
Target:  5'- cGCGCCggcgACGCCgucagugagcgcgcuUGGCGGCcgcGgcCGCCg -3'
miRNA:   3'- -CGUGGa---UGCGG---------------GUCGCCGa--CaaGCGG- -5'
7879 5' -58 NC_001973.1 + 158439 0.66 0.857601
Target:  5'- cGCGCCcGCGUCCgAGCcGGC---UCGUCa -3'
miRNA:   3'- -CGUGGaUGCGGG-UCG-CCGacaAGCGG- -5'
7879 5' -58 NC_001973.1 + 121680 0.66 0.857601
Target:  5'- gGCGCCcggauaccggUACGCgagcUCGGCGGCggcgUCGUCg -3'
miRNA:   3'- -CGUGG----------AUGCG----GGUCGCCGaca-AGCGG- -5'
7879 5' -58 NC_001973.1 + 128468 0.66 0.856843
Target:  5'- uGC-CCUGCGCUauguccgaCGGCGcguccuugcucauGCUGUacUCGCCc -3'
miRNA:   3'- -CGuGGAUGCGG--------GUCGC-------------CGACA--AGCGG- -5'
7879 5' -58 NC_001973.1 + 158686 0.66 0.855321
Target:  5'- -aGCCgGCgGCCgAGCGcGCgccuaccgacgcccUGUUCGCCg -3'
miRNA:   3'- cgUGGaUG-CGGgUCGC-CG--------------ACAAGCGG- -5'
7879 5' -58 NC_001973.1 + 10728 0.66 0.853023
Target:  5'- gGCACCgucgaguugucgaaGCGCaUCAGCGGCggGUgCGCg -3'
miRNA:   3'- -CGUGGa-------------UGCG-GGUCGCCGa-CAaGCGg -5'
7879 5' -58 NC_001973.1 + 40542 0.66 0.849933
Target:  5'- cCACgUACGCCCugaacaccaauuGGUGGCUGUaCGa- -3'
miRNA:   3'- cGUGgAUGCGGG------------UCGCCGACAaGCgg -5'
7879 5' -58 NC_001973.1 + 77007 0.66 0.849933
Target:  5'- uCACCU-CGUCgGGCGGCggcgGcgCGCg -3'
miRNA:   3'- cGUGGAuGCGGgUCGCCGa---CaaGCGg -5'
7879 5' -58 NC_001973.1 + 124145 0.66 0.849933
Target:  5'- aGCACCUGCGC--GGCgaGGCUcgcuaCGCCg -3'
miRNA:   3'- -CGUGGAUGCGggUCG--CCGAcaa--GCGG- -5'
7879 5' -58 NC_001973.1 + 143425 0.66 0.849933
Target:  5'- uGCGCUUGaucaGCUCGGCGGgaaUGUU-GCCc -3'
miRNA:   3'- -CGUGGAUg---CGGGUCGCCg--ACAAgCGG- -5'
7879 5' -58 NC_001973.1 + 70114 0.66 0.849933
Target:  5'- aCGCCUcgGCGCCC-GCGGCgaugUCGa- -3'
miRNA:   3'- cGUGGA--UGCGGGuCGCCGaca-AGCgg -5'
7879 5' -58 NC_001973.1 + 146854 0.66 0.849933
Target:  5'- aCGCCUugGCGCCUcaggaaGGCGGC-GUgcaaGCCc -3'
miRNA:   3'- cGUGGA--UGCGGG------UCGCCGaCAag--CGG- -5'
7879 5' -58 NC_001973.1 + 61156 0.66 0.842075
Target:  5'- gGCGCCgcuccGCGUCgGGCGGU----CGCCg -3'
miRNA:   3'- -CGUGGa----UGCGGgUCGCCGacaaGCGG- -5'
7879 5' -58 NC_001973.1 + 140369 0.66 0.842075
Target:  5'- aGCGUCgucgcCGCCgAGCGGCUGgcucucgaGCCg -3'
miRNA:   3'- -CGUGGau---GCGGgUCGCCGACaag-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.