miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
788 3' -50.6 NC_000852.3 + 305300 0.66 0.999918
Target:  5'- aUACCUUUGcucGCGGGAgaACCUUCGAa- -3'
miRNA:   3'- -GUGGAAGC---UGCUUUggUGGAAGCUgc -5'
788 3' -50.6 NC_000852.3 + 230861 0.66 0.999865
Target:  5'- aACaacUGACGcAAUUACCUUCGACGu -3'
miRNA:   3'- gUGgaaGCUGCuUUGGUGGAAGCUGC- -5'
788 3' -50.6 NC_000852.3 + 101194 0.66 0.999803
Target:  5'- uGCCcUUGugGAGauGCCacaggggucaucuuaACCUUCGACa -3'
miRNA:   3'- gUGGaAGCugCUU--UGG---------------UGGAAGCUGc -5'
788 3' -50.6 NC_000852.3 + 8512 0.67 0.999486
Target:  5'- uUACUggaauaUCGGCGAAcACCACCUUgGuCGg -3'
miRNA:   3'- -GUGGa-----AGCUGCUU-UGGUGGAAgCuGC- -5'
788 3' -50.6 NC_000852.3 + 110750 0.68 0.999071
Target:  5'- aACCagCGAUGccACCACCUacaaCGACGa -3'
miRNA:   3'- gUGGaaGCUGCuuUGGUGGAa---GCUGC- -5'
788 3' -50.6 NC_000852.3 + 146414 0.68 0.998096
Target:  5'- aGCCgaUGACGGAACCGUCgUCGugGg -3'
miRNA:   3'- gUGGaaGCUGCUUUGGUGGaAGCugC- -5'
788 3' -50.6 NC_000852.3 + 92799 0.69 0.997351
Target:  5'- aACCUcuUCGguaucaGCGAccgcACCACCUUCGAUa -3'
miRNA:   3'- gUGGA--AGC------UGCUu---UGGUGGAAGCUGc -5'
788 3' -50.6 NC_000852.3 + 102221 0.69 0.996895
Target:  5'- -uCCgUCGAUacAACCACCUUUGGCa -3'
miRNA:   3'- guGGaAGCUGcuUUGGUGGAAGCUGc -5'
788 3' -50.6 NC_000852.3 + 214588 0.69 0.996895
Target:  5'- gCACCaUCGACGAuuACCGCCcuccUCGGUGg -3'
miRNA:   3'- -GUGGaAGCUGCUu-UGGUGGa---AGCUGC- -5'
788 3' -50.6 NC_000852.3 + 151133 0.72 0.982744
Target:  5'- -uUCUUCGGCGAGAacuCCUUCGGCu -3'
miRNA:   3'- guGGAAGCUGCUUUgguGGAAGCUGc -5'
788 3' -50.6 NC_000852.3 + 175085 0.72 0.973812
Target:  5'- uCAUCUUCGGCGucguauucACCACCUUCaGCa -3'
miRNA:   3'- -GUGGAAGCUGCuu------UGGUGGAAGcUGc -5'
788 3' -50.6 NC_000852.3 + 323650 0.82 0.609058
Target:  5'- cCACCUUCGACGAAACCACCa------ -3'
miRNA:   3'- -GUGGAAGCUGCUUUGGUGGaagcugc -5'
788 3' -50.6 NC_000852.3 + 323560 0.87 0.403881
Target:  5'- cCACCUUCaACGAAACCACCUUCaACGa -3'
miRNA:   3'- -GUGGAAGcUGCUUUGGUGGAAGcUGC- -5'
788 3' -50.6 NC_000852.3 + 323500 0.87 0.403881
Target:  5'- cCACCUUCaACGAAACCACCUUCaACGa -3'
miRNA:   3'- -GUGGAAGcUGCUUUGGUGGAAGcUGC- -5'
788 3' -50.6 NC_000852.3 + 323530 0.87 0.403881
Target:  5'- cCACCUUCaACGAAACCACCUUCaACGa -3'
miRNA:   3'- -GUGGAAGcUGCUUUGGUGGAAGcUGC- -5'
788 3' -50.6 NC_000852.3 + 323620 1.1 0.020893
Target:  5'- cCACCUUCGACGAAACCACCUUCGACGa -3'
miRNA:   3'- -GUGGAAGCUGCUUUGGUGGAAGCUGC- -5'
788 3' -50.6 NC_000852.3 + 323590 1.1 0.020893
Target:  5'- cCACCUUCGACGAAACCACCUUCGACGa -3'
miRNA:   3'- -GUGGAAGCUGCUUUGGUGGAAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.