miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
788 5' -48.5 NC_000852.3 + 237129 0.66 0.999983
Target:  5'- -aCGA-GAAAUCACgUaUCGACGAAAUa -3'
miRNA:   3'- aaGCUgCUUUGGUGgA-AGCUGCUUUG- -5'
788 5' -48.5 NC_000852.3 + 127807 0.66 0.999983
Target:  5'- aUCGugGAGAgCACCUcCGGCc--GCa -3'
miRNA:   3'- aAGCugCUUUgGUGGAaGCUGcuuUG- -5'
788 5' -48.5 NC_000852.3 + 137377 0.66 0.999983
Target:  5'- aUUCGugGAGAauaCAUUgaUGACGAAACc -3'
miRNA:   3'- -AAGCugCUUUg--GUGGaaGCUGCUUUG- -5'
788 5' -48.5 NC_000852.3 + 316345 0.66 0.999983
Target:  5'- -aUGACGA----ACCUUCGACGAGc- -3'
miRNA:   3'- aaGCUGCUuuggUGGAAGCUGCUUug -5'
788 5' -48.5 NC_000852.3 + 110755 0.66 0.999983
Target:  5'- -gCGAUGccACCACCUacaaCGACGAGu- -3'
miRNA:   3'- aaGCUGCuuUGGUGGAa---GCUGCUUug -5'
788 5' -48.5 NC_000852.3 + 21026 0.66 0.999983
Target:  5'- aUCGGCGAuauagcauggcaaauAUCAUCauacgUCGACGGAACc -3'
miRNA:   3'- aAGCUGCUu--------------UGGUGGa----AGCUGCUUUG- -5'
788 5' -48.5 NC_000852.3 + 66939 0.66 0.999982
Target:  5'- aUUCcACGAAGCCAUC-UCGAgauaccuCGAAACc -3'
miRNA:   3'- -AAGcUGCUUUGGUGGaAGCU-------GCUUUG- -5'
788 5' -48.5 NC_000852.3 + 146409 0.66 0.999977
Target:  5'- -aUGACGGAACCGUCgUCGugGGAc- -3'
miRNA:   3'- aaGCUGCUUUGGUGGaAGCugCUUug -5'
788 5' -48.5 NC_000852.3 + 106962 0.66 0.999975
Target:  5'- cUCG-CGAGGCCGCUaaggccgcugcuaaGACGAAGCg -3'
miRNA:   3'- aAGCuGCUUUGGUGGaag-----------CUGCUUUG- -5'
788 5' -48.5 NC_000852.3 + 2911 0.66 0.999975
Target:  5'- -aUGACGucaagaguugcACCugCUUCGACGAGcaGCu -3'
miRNA:   3'- aaGCUGCuu---------UGGugGAAGCUGCUU--UG- -5'
788 5' -48.5 NC_000852.3 + 296777 0.67 0.999969
Target:  5'- cUUGACGAuuuugacAUCGCUUgUGACGAAACg -3'
miRNA:   3'- aAGCUGCUu------UGGUGGAaGCUGCUUUG- -5'
788 5' -48.5 NC_000852.3 + 69677 0.67 0.999945
Target:  5'- -aCGACGAAuCUGCUUUCGGUGAAAa -3'
miRNA:   3'- aaGCUGCUUuGGUGGAAGCUGCUUUg -5'
788 5' -48.5 NC_000852.3 + 295086 0.67 0.999944
Target:  5'- cUUCGuuCGAAACCACUUgcaaacauuccuaUCGAaGAAGCa -3'
miRNA:   3'- -AAGCu-GCUUUGGUGGA-------------AGCUgCUUUG- -5'
788 5' -48.5 NC_000852.3 + 223740 0.68 0.999879
Target:  5'- -aCGAUGAAugauggguuugcACCACCUuucUCGAaaacaGAAACa -3'
miRNA:   3'- aaGCUGCUU------------UGGUGGA---AGCUg----CUUUG- -5'
788 5' -48.5 NC_000852.3 + 151135 0.68 0.999751
Target:  5'- cUUCGGCGAGAacuCCUUCGGCuaGAACu -3'
miRNA:   3'- -AAGCUGCUUUgguGGAAGCUGc-UUUG- -5'
788 5' -48.5 NC_000852.3 + 163656 0.68 0.999751
Target:  5'- -aUGGCGAu-CUACCgUCGACGGAAa -3'
miRNA:   3'- aaGCUGCUuuGGUGGaAGCUGCUUUg -5'
788 5' -48.5 NC_000852.3 + 102224 0.68 0.999751
Target:  5'- gUCGAUacAACCACCUUUGGCa---- -3'
miRNA:   3'- aAGCUGcuUUGGUGGAAGCUGcuuug -5'
788 5' -48.5 NC_000852.3 + 230866 0.68 0.999687
Target:  5'- -cUGACGcAAUUACCUUCGACGuauccuACg -3'
miRNA:   3'- aaGCUGCuUUGGUGGAAGCUGCuu----UG- -5'
788 5' -48.5 NC_000852.3 + 323649 0.69 0.999609
Target:  5'- ---------nCCACCUUCGACGAAACc -3'
miRNA:   3'- aagcugcuuuGGUGGAAGCUGCUUUG- -5'
788 5' -48.5 NC_000852.3 + 112615 0.69 0.999265
Target:  5'- --gGACGAAGCCAaucguuCCUUCGcAUGAAAa -3'
miRNA:   3'- aagCUGCUUUGGU------GGAAGC-UGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.