miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7888 5' -58.3 NC_001973.1 + 106964 0.66 0.831919
Target:  5'- -cGGGCGCGC--UCGG-CGUGcGCGCGc -3'
miRNA:   3'- uuCCUGCGCGgcAGCCuGUAU-CGCGU- -5'
7888 5' -58.3 NC_001973.1 + 26517 0.66 0.831919
Target:  5'- --aGACGCGCuCGaC-GACGUAGCGCu -3'
miRNA:   3'- uucCUGCGCG-GCaGcCUGUAUCGCGu -5'
7888 5' -58.3 NC_001973.1 + 58742 0.66 0.831919
Target:  5'- cAGcGGCGCGCCGUCgcgccccucguGGAagaGUgccGGCGCGc -3'
miRNA:   3'- uUC-CUGCGCGGCAG-----------CCUg--UA---UCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 104643 0.66 0.82358
Target:  5'- cGAGcGCGaCGCCGUCGaACuccaaGUAGCGCGc -3'
miRNA:   3'- -UUCcUGC-GCGGCAGCcUG-----UAUCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 14374 0.66 0.815071
Target:  5'- cGGGGCGCGgCGaggcCGGACAgUAGCccGCGa -3'
miRNA:   3'- uUCCUGCGCgGCa---GCCUGU-AUCG--CGU- -5'
7888 5' -58.3 NC_001973.1 + 39403 0.66 0.806399
Target:  5'- -cGGcGCGCGCCagGUCGGccGCGgugaGGCGCGu -3'
miRNA:   3'- uuCC-UGCGCGG--CAGCC--UGUa---UCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 84325 0.66 0.806399
Target:  5'- cAGGACGUcagcuacgGCCGgcugcaggaGGACAUcgAGCGCGu -3'
miRNA:   3'- uUCCUGCG--------CGGCag-------CCUGUA--UCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 54214 0.66 0.806399
Target:  5'- cGAGGACGCcuccacgcccaGCaUGUCcauggcgagcuGGAUGUAGCGCAa -3'
miRNA:   3'- -UUCCUGCG-----------CG-GCAG-----------CCUGUAUCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 133095 0.66 0.805523
Target:  5'- gAGGuGACGCGCU--UGGACGUggagaggAGCGCGc -3'
miRNA:   3'- -UUC-CUGCGCGGcaGCCUGUA-------UCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 138025 0.66 0.797572
Target:  5'- cAGGGugucgaccaGCGCGCCGUCGcACA-GGUGCu -3'
miRNA:   3'- -UUCC---------UGCGCGGCAGCcUGUaUCGCGu -5'
7888 5' -58.3 NC_001973.1 + 122716 0.66 0.797572
Target:  5'- --cGAcCGCGCCGUCGGucgcgacggacaGCAgcuuGCGCGg -3'
miRNA:   3'- uucCU-GCGCGGCAGCC------------UGUau--CGCGU- -5'
7888 5' -58.3 NC_001973.1 + 95834 0.66 0.788599
Target:  5'- -cGGGCGCGgCGaCGGGCccGGUGCc -3'
miRNA:   3'- uuCCUGCGCgGCaGCCUGuaUCGCGu -5'
7888 5' -58.3 NC_001973.1 + 121307 0.66 0.788599
Target:  5'- -cGGcGCGCGCCGgCGGAC---GCGCc -3'
miRNA:   3'- uuCC-UGCGCGGCaGCCUGuauCGCGu -5'
7888 5' -58.3 NC_001973.1 + 23578 0.66 0.788599
Target:  5'- -cGGACGCGCCGccCGcGCu--GCGCGc -3'
miRNA:   3'- uuCCUGCGCGGCa-GCcUGuauCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 122669 0.66 0.788599
Target:  5'- -----gGCGCCGUCGGGCcagaacGCGCGg -3'
miRNA:   3'- uuccugCGCGGCAGCCUGuau---CGCGU- -5'
7888 5' -58.3 NC_001973.1 + 7295 0.67 0.779489
Target:  5'- -cGGGucaagcacacCGCGCUGUCGGugAacguGCGCGg -3'
miRNA:   3'- uuCCU----------GCGCGGCAGCCugUau--CGCGU- -5'
7888 5' -58.3 NC_001973.1 + 74119 0.67 0.779489
Target:  5'- cGGuGACGCcgguGCCGUCGGGgAauuGCGCGc -3'
miRNA:   3'- uUC-CUGCG----CGGCAGCCUgUau-CGCGU- -5'
7888 5' -58.3 NC_001973.1 + 83304 0.67 0.779489
Target:  5'- -uGGGCGCGCuCGUCGacuGCAUcaacagggaggcGGCGCu -3'
miRNA:   3'- uuCCUGCGCG-GCAGCc--UGUA------------UCGCGu -5'
7888 5' -58.3 NC_001973.1 + 100916 0.67 0.760888
Target:  5'- cAGGAUGUaGCUGUugagacUGGugAUGGCGCGc -3'
miRNA:   3'- uUCCUGCG-CGGCA------GCCugUAUCGCGU- -5'
7888 5' -58.3 NC_001973.1 + 77381 0.67 0.760888
Target:  5'- ---cGCGCGCCGgcgccgacguuUUGGugAUGGCGCu -3'
miRNA:   3'- uuccUGCGCGGC-----------AGCCugUAUCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.