miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7890 3' -57.7 NC_001973.1 + 136430 0.66 0.86723
Target:  5'- cACGCG-CUGCgCGAGCgCAG---GGGCg -3'
miRNA:   3'- -UGCGCgGGCG-GCUCGaGUCaaaUCCG- -5'
7890 3' -57.7 NC_001973.1 + 61099 0.66 0.86723
Target:  5'- cGCGCGgCCGaCgGAGCagCGGcggcgGGGCg -3'
miRNA:   3'- -UGCGCgGGC-GgCUCGa-GUCaaa--UCCG- -5'
7890 3' -57.7 NC_001973.1 + 113213 0.66 0.86723
Target:  5'- cACGCGUCCGCCGcGU--AGac-GGGCu -3'
miRNA:   3'- -UGCGCGGGCGGCuCGagUCaaaUCCG- -5'
7890 3' -57.7 NC_001973.1 + 55903 0.66 0.859764
Target:  5'- uCGgGCUCGggcUCGGGCUCGGgcucGGGCu -3'
miRNA:   3'- uGCgCGGGC---GGCUCGAGUCaaa-UCCG- -5'
7890 3' -57.7 NC_001973.1 + 150983 0.66 0.859764
Target:  5'- uACGCGUCgGCCGGGgUC-GUUaaAGGUu -3'
miRNA:   3'- -UGCGCGGgCGGCUCgAGuCAAa-UCCG- -5'
7890 3' -57.7 NC_001973.1 + 58468 0.66 0.859764
Target:  5'- aGC-CGCCCGCUGccaaacguGCUCGGc--GGGCc -3'
miRNA:   3'- -UGcGCGGGCGGCu-------CGAGUCaaaUCCG- -5'
7890 3' -57.7 NC_001973.1 + 115385 0.66 0.859764
Target:  5'- gACGCGaCCCGCCG-GCUgAGcgc--GCa -3'
miRNA:   3'- -UGCGC-GGGCGGCuCGAgUCaaaucCG- -5'
7890 3' -57.7 NC_001973.1 + 157910 0.66 0.859764
Target:  5'- cCGCGCCCG-CGAGCgcgCAau---GGCu -3'
miRNA:   3'- uGCGCGGGCgGCUCGa--GUcaaauCCG- -5'
7890 3' -57.7 NC_001973.1 + 40061 0.66 0.852097
Target:  5'- uCGCGCaCGCCGucccacacGCUCAGc--GGGCc -3'
miRNA:   3'- uGCGCGgGCGGCu-------CGAGUCaaaUCCG- -5'
7890 3' -57.7 NC_001973.1 + 61183 0.66 0.852097
Target:  5'- gACGCuCCuCGCUGAacgcgcGCUCGGgc-GGGCg -3'
miRNA:   3'- -UGCGcGG-GCGGCU------CGAGUCaaaUCCG- -5'
7890 3' -57.7 NC_001973.1 + 142324 0.66 0.852097
Target:  5'- uCGUGCUCGCCucGCUgGGUUUcGuGCa -3'
miRNA:   3'- uGCGCGGGCGGcuCGAgUCAAAuC-CG- -5'
7890 3' -57.7 NC_001973.1 + 82498 0.66 0.852097
Target:  5'- cGCGCGCCuUGCCGgcgucgcggccGGCcugCAG-UUGGGUu -3'
miRNA:   3'- -UGCGCGG-GCGGC-----------UCGa--GUCaAAUCCG- -5'
7890 3' -57.7 NC_001973.1 + 120640 0.66 0.849759
Target:  5'- aGCGCGCCgGCgaCGAGUacaUCgAGUUucucaacggcgacaUGGGCa -3'
miRNA:   3'- -UGCGCGGgCG--GCUCG---AG-UCAA--------------AUCCG- -5'
7890 3' -57.7 NC_001973.1 + 47940 0.66 0.845031
Target:  5'- aGCGCGCCCuCCGAaGCgcaaAGUgcaacugcgacgcgAGGCu -3'
miRNA:   3'- -UGCGCGGGcGGCU-CGag--UCAaa------------UCCG- -5'
7890 3' -57.7 NC_001973.1 + 128305 0.66 0.836188
Target:  5'- -aGCGCCgacgccaacUGCUGAuuuuGCUCGGUUUuGGCc -3'
miRNA:   3'- ugCGCGG---------GCGGCU----CGAGUCAAAuCCG- -5'
7890 3' -57.7 NC_001973.1 + 100180 0.66 0.836188
Target:  5'- aGCGCGCCCaaaucgagGgCGAGCaacUCGGcUUUgucGGGCg -3'
miRNA:   3'- -UGCGCGGG--------CgGCUCG---AGUC-AAA---UCCG- -5'
7890 3' -57.7 NC_001973.1 + 39406 0.66 0.827958
Target:  5'- cGCGCGCCagGUCG-GCcgCGGUg-AGGCg -3'
miRNA:   3'- -UGCGCGGg-CGGCuCGa-GUCAaaUCCG- -5'
7890 3' -57.7 NC_001973.1 + 17847 0.66 0.827958
Target:  5'- gGCGUGCCCGUCGAaaa-AGUaccacgAGGCg -3'
miRNA:   3'- -UGCGCGGGCGGCUcgagUCAaa----UCCG- -5'
7890 3' -57.7 NC_001973.1 + 56544 0.66 0.827958
Target:  5'- nCGgGCUcggCGCCGAGCUCGauaucGGGCu -3'
miRNA:   3'- uGCgCGG---GCGGCUCGAGUcaaa-UCCG- -5'
7890 3' -57.7 NC_001973.1 + 133336 0.67 0.822094
Target:  5'- cGCGCGCgaCGCCGAccgucgcgaacccGCUCucggccguguagacgAGUUUGGuGCg -3'
miRNA:   3'- -UGCGCGg-GCGGCU-------------CGAG---------------UCAAAUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.