miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7899 5' -53.7 NC_001973.1 + 93498 0.66 0.974664
Target:  5'- cGAUGACgcaguUUGCCGUgAACGcgcuGCUCGc -3'
miRNA:   3'- aCUGCUGau---AGCGGCG-UUGCu---CGAGC- -5'
7899 5' -53.7 NC_001973.1 + 36699 0.66 0.974664
Target:  5'- -cGCGGCcGUCGuCCGCuucGCGAGCa-- -3'
miRNA:   3'- acUGCUGaUAGC-GGCGu--UGCUCGagc -5'
7899 5' -53.7 NC_001973.1 + 109640 0.66 0.974664
Target:  5'- -cGCGACUucgacgCGCUGUAcgauACGAuGCUCGa -3'
miRNA:   3'- acUGCUGAua----GCGGCGU----UGCU-CGAGC- -5'
7899 5' -53.7 NC_001973.1 + 78008 0.66 0.974664
Target:  5'- aGGUGAUgc-UGCCGCGcgaccGCGAGCUCa -3'
miRNA:   3'- aCUGCUGauaGCGGCGU-----UGCUCGAGc -5'
7899 5' -53.7 NC_001973.1 + 52794 0.66 0.974664
Target:  5'- cGA-GACUcugCGCgGCGAacuCGGGCUCGa -3'
miRNA:   3'- aCUgCUGAua-GCGgCGUU---GCUCGAGC- -5'
7899 5' -53.7 NC_001973.1 + 23198 0.66 0.974664
Target:  5'- aGAUGACgcgCGCCG--ACGAGCgCGc -3'
miRNA:   3'- aCUGCUGauaGCGGCguUGCUCGaGC- -5'
7899 5' -53.7 NC_001973.1 + 78621 0.66 0.971958
Target:  5'- gGACGACgag-GCCGCGG-GcGCUCGa -3'
miRNA:   3'- aCUGCUGauagCGGCGUUgCuCGAGC- -5'
7899 5' -53.7 NC_001973.1 + 142420 0.66 0.971958
Target:  5'- aGACGAUcg-UGCC-CGGCGAGC-CGa -3'
miRNA:   3'- aCUGCUGauaGCGGcGUUGCUCGaGC- -5'
7899 5' -53.7 NC_001973.1 + 144067 0.66 0.971958
Target:  5'- aGACGugUcugaaGCUGUAcaGCGAGUUCGc -3'
miRNA:   3'- aCUGCugAuag--CGGCGU--UGCUCGAGC- -5'
7899 5' -53.7 NC_001973.1 + 83089 0.66 0.971958
Target:  5'- cGGCGGCgg-CGCCGU--CGcGCUCa -3'
miRNA:   3'- aCUGCUGauaGCGGCGuuGCuCGAGc -5'
7899 5' -53.7 NC_001973.1 + 102818 0.66 0.971958
Target:  5'- cGGCGucaUGgcgCGCCGCAACGAcaGCagCGa -3'
miRNA:   3'- aCUGCug-AUa--GCGGCGUUGCU--CGa-GC- -5'
7899 5' -53.7 NC_001973.1 + 32113 0.66 0.971958
Target:  5'- cGAUGAUgg-CGCgCGCGAUGucGCUCa -3'
miRNA:   3'- aCUGCUGauaGCG-GCGUUGCu-CGAGc -5'
7899 5' -53.7 NC_001973.1 + 72447 0.66 0.971958
Target:  5'- aUGAUGAUgaUGUCauGCCuaAcCGAGCUCGg -3'
miRNA:   3'- -ACUGCUG--AUAG--CGGcgUuGCUCGAGC- -5'
7899 5' -53.7 NC_001973.1 + 107063 0.66 0.969049
Target:  5'- uUGACGA--AUCGCgCGCGcacuCGAGC-CGg -3'
miRNA:   3'- -ACUGCUgaUAGCG-GCGUu---GCUCGaGC- -5'
7899 5' -53.7 NC_001973.1 + 77020 0.66 0.969049
Target:  5'- cGGCGGCgg-CGCgCGCAaggACGAuaGCUCc -3'
miRNA:   3'- aCUGCUGauaGCG-GCGU---UGCU--CGAGc -5'
7899 5' -53.7 NC_001973.1 + 119437 0.66 0.967204
Target:  5'- cGACGGCcacucgAUCGCCGCGcccgccgccgccgccGcCGAGCcCGu -3'
miRNA:   3'- aCUGCUGa-----UAGCGGCGU---------------U-GCUCGaGC- -5'
7899 5' -53.7 NC_001973.1 + 115467 0.66 0.965932
Target:  5'- -aGCGACUG-CGCCGCGugcugACGcAGCgCGa -3'
miRNA:   3'- acUGCUGAUaGCGGCGU-----UGC-UCGaGC- -5'
7899 5' -53.7 NC_001973.1 + 114535 0.66 0.965932
Target:  5'- -cACGAgUAUCGCgGCGGCaugaucucaucGGGCUUGa -3'
miRNA:   3'- acUGCUgAUAGCGgCGUUG-----------CUCGAGC- -5'
7899 5' -53.7 NC_001973.1 + 7240 0.66 0.965932
Target:  5'- gGACaccACcGUCGagcagaugCGCAGCGGGCUCGg -3'
miRNA:   3'- aCUGc--UGaUAGCg-------GCGUUGCUCGAGC- -5'
7899 5' -53.7 NC_001973.1 + 25922 0.66 0.9626
Target:  5'- -aGCaGCUcgCcGCCGCgGGCGGGCUCGc -3'
miRNA:   3'- acUGcUGAuaG-CGGCG-UUGCUCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.