miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
79 3' -49.4 AC_000005.1 + 14851 0.66 0.892084
Target:  5'- aCGUAgGgACAGGuccGGCGGCGGGcgucaguGAUGGu -3'
miRNA:   3'- -GUAUaCgUGUUC---UCGCCGCUC-------UUACC- -5'
79 3' -49.4 AC_000005.1 + 21947 0.66 0.868251
Target:  5'- --gGUGCGCaAAGAGCauuuGGUGGaAAUGGa -3'
miRNA:   3'- guaUACGUG-UUCUCG----CCGCUcUUACC- -5'
79 3' -49.4 AC_000005.1 + 19649 0.67 0.821631
Target:  5'- aAUggGCACGcuGGUGGCGuuagcuGGGAUGGg -3'
miRNA:   3'- gUAuaCGUGUucUCGCCGC------UCUUACC- -5'
79 3' -49.4 AC_000005.1 + 17800 0.68 0.790769
Target:  5'- gAUGUGCAUguAAGAccacuGCGGCaucaucgaGGGAGUGGc -3'
miRNA:   3'- gUAUACGUG--UUCU-----CGCCG--------CUCUUACC- -5'
79 3' -49.4 AC_000005.1 + 15254 0.69 0.746979
Target:  5'- ----gGCGCAuuGGGCGGCGAGcuAUGa -3'
miRNA:   3'- guauaCGUGUu-CUCGCCGCUCu-UACc -5'
79 3' -49.4 AC_000005.1 + 22759 0.69 0.735654
Target:  5'- --aAUG-GCGGGAGCGGUGGGGGcGGu -3'
miRNA:   3'- guaUACgUGUUCUCGCCGCUCUUaCC- -5'
79 3' -49.4 AC_000005.1 + 2466 0.7 0.665651
Target:  5'- gGUAUGgGCccAGGGGUGGUGGGuuUGGa -3'
miRNA:   3'- gUAUACgUG--UUCUCGCCGCUCuuACC- -5'
79 3' -49.4 AC_000005.1 + 8053 0.71 0.606161
Target:  5'- ----aGCACGAGAGgGGCG-GAAacgGGa -3'
miRNA:   3'- guauaCGUGUUCUCgCCGCuCUUa--CC- -5'
79 3' -49.4 AC_000005.1 + 13093 1.13 0.001181
Target:  5'- aCAUAUGCACAAGAGCGGCGAGAAUGGg -3'
miRNA:   3'- -GUAUACGUGUUCUCGCCGCUCUUACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.