miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 5' -53 NC_001973.1 + 1369 0.66 0.981975
Target:  5'- cAGCGCgcguccGGCGcgcGCCAAacucuaGUCGACGCu -3'
miRNA:   3'- -UCGCGaaa---CUGC---CGGUUc-----UAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 95716 0.66 0.981975
Target:  5'- cGGCGCggUGcgcCGGCU---GUUGGCGCa -3'
miRNA:   3'- -UCGCGaaACu--GCCGGuucUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 145011 0.66 0.981975
Target:  5'- uGGCgGCUccGGCGGCgccCGAGugCGGCGCg -3'
miRNA:   3'- -UCG-CGAaaCUGCCG---GUUCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 122634 0.66 0.981143
Target:  5'- gGGCGCcggcGuCGGUCGAGAgagcaccugaacgCGGCGCc -3'
miRNA:   3'- -UCGCGaaa-CuGCCGGUUCUa------------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 111076 0.66 0.979842
Target:  5'- cGGCGCccgacGugGGCCGcgucgaggAGAgcgaCGACGUg -3'
miRNA:   3'- -UCGCGaaa--CugCCGGU--------UCUa---GCUGCG- -5'
7901 5' -53 NC_001973.1 + 131772 0.66 0.975021
Target:  5'- cGCGgUUgacgacGGCGGCCGgcucggugaaggGGccGUCGACGCc -3'
miRNA:   3'- uCGCgAAa-----CUGCCGGU------------UC--UAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 137267 0.66 0.975021
Target:  5'- gAGUGUgc-GGCGGCgGGGcUCGGcCGCg -3'
miRNA:   3'- -UCGCGaaaCUGCCGgUUCuAGCU-GCG- -5'
7901 5' -53 NC_001973.1 + 117518 0.66 0.976047
Target:  5'- cGGCGCguagacuuccacGGCGGUgGGGGUgucgucCGACGCg -3'
miRNA:   3'- -UCGCGaaa---------CUGCCGgUUCUA------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 61683 0.66 0.977527
Target:  5'- cGGCGCgaa-GCGGC----GUCGGCGCg -3'
miRNA:   3'- -UCGCGaaacUGCCGguucUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 122583 0.66 0.977527
Target:  5'- gGGCGCcgguccgaaucUUUGcuGCGGCgGAGGcgUCGGCGg -3'
miRNA:   3'- -UCGCG-----------AAAC--UGCCGgUUCU--AGCUGCg -5'
7901 5' -53 NC_001973.1 + 157877 0.66 0.979619
Target:  5'- aGGCGCU---GCGGCUcgugucgGAGGUCGcggccgccGCGCc -3'
miRNA:   3'- -UCGCGAaacUGCCGG-------UUCUAGC--------UGCG- -5'
7901 5' -53 NC_001973.1 + 56341 0.67 0.959024
Target:  5'- cGCGCUc--GCGGCCGcgcucGGGccccgacUCGGCGCc -3'
miRNA:   3'- uCGCGAaacUGCCGGU-----UCU-------AGCUGCG- -5'
7901 5' -53 NC_001973.1 + 8190 0.67 0.959392
Target:  5'- gAGCGCgccGACGGCaccGcUUGGCGCc -3'
miRNA:   3'- -UCGCGaaaCUGCCGguuCuAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 116194 0.67 0.959392
Target:  5'- aAGCGC----GCGGCCAAcGaAUCG-CGCa -3'
miRNA:   3'- -UCGCGaaacUGCCGGUU-C-UAGCuGCG- -5'
7901 5' -53 NC_001973.1 + 62600 0.67 0.959392
Target:  5'- cGuCGCUcgagcGACGcGUCGuGGUCGACGCg -3'
miRNA:   3'- uC-GCGAaa---CUGC-CGGUuCUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 133169 0.67 0.959392
Target:  5'- cAGCGCcUUGAacUGGUCGAGcagagcGUCGaACGCc -3'
miRNA:   3'- -UCGCGaAACU--GCCGGUUC------UAGC-UGCG- -5'
7901 5' -53 NC_001973.1 + 6183 0.67 0.962607
Target:  5'- uGUGCUUcaUGACGGUgGuGAUcaaccggCGGCGCg -3'
miRNA:   3'- uCGCGAA--ACUGCCGgUuCUA-------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 133956 0.67 0.962953
Target:  5'- gGGCGUacucGACGGCCGucucCGACGUc -3'
miRNA:   3'- -UCGCGaaa-CUGCCGGUucuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 23084 0.67 0.966291
Target:  5'- uGGCGCUgcgcuCGGCCgAAGAgCG-CGCc -3'
miRNA:   3'- -UCGCGAaacu-GCCGG-UUCUaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 94102 0.67 0.958653
Target:  5'- gAGCGCauacacgccgUGGCCGAGGacauucugaacaagcUCGACGCg -3'
miRNA:   3'- -UCGCGaaacu-----GCCGGUUCU---------------AGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.