miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 5' -53 NC_001973.1 + 61099 0.66 0.97315
Target:  5'- cGCGCggccgacggagcagcGGCGGCgGGGcgCGGCGUc -3'
miRNA:   3'- uCGCGaaa------------CUGCCGgUUCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 66923 0.66 0.972318
Target:  5'- aAGCGCUacaGCGGCCA-----GACGCg -3'
miRNA:   3'- -UCGCGAaacUGCCGGUucuagCUGCG- -5'
7901 5' -53 NC_001973.1 + 56199 0.66 0.972318
Target:  5'- uAGuCGCUUUcgucGGCGucggcGCCGGGcgCGAUGCg -3'
miRNA:   3'- -UC-GCGAAA----CUGC-----CGGUUCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 7928 0.66 0.972318
Target:  5'- gAGCGCgugUGcGCGGCCGg---CGugGUg -3'
miRNA:   3'- -UCGCGaa-AC-UGCCGGUucuaGCugCG- -5'
7901 5' -53 NC_001973.1 + 109841 0.66 0.971468
Target:  5'- uGCGCUUccGCGGCgucgccgccgccgaCGAGGacgCGGCGCg -3'
miRNA:   3'- uCGCGAAacUGCCG--------------GUUCUa--GCUGCG- -5'
7901 5' -53 NC_001973.1 + 126100 0.66 0.96941
Target:  5'- gAGCGUgccgacgcgUGAgccCGGCCGGGuuaaUGACGCa -3'
miRNA:   3'- -UCGCGaa-------ACU---GCCGGUUCua--GCUGCG- -5'
7901 5' -53 NC_001973.1 + 128946 0.66 0.96941
Target:  5'- uGCGC-----CGGCUAGGGUCGAUGa -3'
miRNA:   3'- uCGCGaaacuGCCGGUUCUAGCUGCg -5'
7901 5' -53 NC_001973.1 + 129009 0.66 0.96941
Target:  5'- cGCGU-----CGGCCAGGGUCGAUa- -3'
miRNA:   3'- uCGCGaaacuGCCGGUUCUAGCUGcg -5'
7901 5' -53 NC_001973.1 + 34201 0.66 0.96941
Target:  5'- gAGCGCgUUGGacgucuUGGCCA-GGUCGugcagcucGCGCg -3'
miRNA:   3'- -UCGCGaAACU------GCCGGUuCUAGC--------UGCG- -5'
7901 5' -53 NC_001973.1 + 55651 0.66 0.96941
Target:  5'- aAGCGCgucgGAUGggaGCCGAGGcCGGCGg -3'
miRNA:   3'- -UCGCGaaa-CUGC---CGGUUCUaGCUGCg -5'
7901 5' -53 NC_001973.1 + 12204 0.66 0.968803
Target:  5'- cGCGUaggauuuuacgUGcCGGCCAGGGUCGAuCGa -3'
miRNA:   3'- uCGCGaa---------ACuGCCGGUUCUAGCU-GCg -5'
7901 5' -53 NC_001973.1 + 23084 0.67 0.966291
Target:  5'- uGGCGCUgcgcuCGGCCgAAGAgCG-CGCc -3'
miRNA:   3'- -UCGCGAaacu-GCCGG-UUCUaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 95931 0.67 0.966291
Target:  5'- cGCGUacgacucGACGGCCAaaGGcgCGuACGCu -3'
miRNA:   3'- uCGCGaaa----CUGCCGGU--UCuaGC-UGCG- -5'
7901 5' -53 NC_001973.1 + 133956 0.67 0.962953
Target:  5'- gGGCGUacucGACGGCCGucucCGACGUc -3'
miRNA:   3'- -UCGCGaaa-CUGCCGGUucuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 6183 0.67 0.962607
Target:  5'- uGUGCUUcaUGACGGUgGuGAUcaaccggCGGCGCg -3'
miRNA:   3'- uCGCGAA--ACUGCCGgUuCUA-------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 133169 0.67 0.959392
Target:  5'- cAGCGCcUUGAacUGGUCGAGcagagcGUCGaACGCc -3'
miRNA:   3'- -UCGCGaAACU--GCCGGUUC------UAGC-UGCG- -5'
7901 5' -53 NC_001973.1 + 62600 0.67 0.959392
Target:  5'- cGuCGCUcgagcGACGcGUCGuGGUCGACGCg -3'
miRNA:   3'- uC-GCGAaa---CUGC-CGGUuCUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 116194 0.67 0.959392
Target:  5'- aAGCGC----GCGGCCAAcGaAUCG-CGCa -3'
miRNA:   3'- -UCGCGaaacUGCCGGUU-C-UAGCuGCG- -5'
7901 5' -53 NC_001973.1 + 8190 0.67 0.959392
Target:  5'- gAGCGCgccGACGGCaccGcUUGGCGCc -3'
miRNA:   3'- -UCGCGaaaCUGCCGguuCuAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 56341 0.67 0.959024
Target:  5'- cGCGCUc--GCGGCCGcgcucGGGccccgacUCGGCGCc -3'
miRNA:   3'- uCGCGAaacUGCCGGU-----UCU-------AGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.