miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7907 3' -52.3 NC_001973.1 + 56511 0.66 0.985944
Target:  5'- gGCGG-GGCGGgcucggcgccaagcUCGGGCGgGGCGGGCu -3'
miRNA:   3'- -CGCCgUCGUCa-------------AGCUCGUgCUGUUUG- -5'
7907 3' -52.3 NC_001973.1 + 56457 0.66 0.985944
Target:  5'- gGCGG-GGCGGgcucggcgccaagcUCGGGCGgGGCGGGCu -3'
miRNA:   3'- -CGCCgUCGUCa-------------AGCUCGUgCUGUUUG- -5'
7907 3' -52.3 NC_001973.1 + 87464 0.66 0.985944
Target:  5'- gGCGcGCAGCAGguccUUGAGCuucuccucguucaccAUGACGuAGCg -3'
miRNA:   3'- -CGC-CGUCGUCa---AGCUCG---------------UGCUGU-UUG- -5'
7907 3' -52.3 NC_001973.1 + 65211 0.66 0.985247
Target:  5'- -gGGcCGGCA---CGAGCGCGACAuAUa -3'
miRNA:   3'- cgCC-GUCGUcaaGCUCGUGCUGUuUG- -5'
7907 3' -52.3 NC_001973.1 + 79260 0.66 0.985247
Target:  5'- uGCuGCAGCGGUacguggaCGAGCagcacaucgGCGACGAGg -3'
miRNA:   3'- -CGcCGUCGUCAa------GCUCG---------UGCUGUUUg -5'
7907 3' -52.3 NC_001973.1 + 14356 0.66 0.985247
Target:  5'- cGUGGuCGGCGuggUCGAcgggGCGCGGCGAGg -3'
miRNA:   3'- -CGCC-GUCGUca-AGCU----CGUGCUGUUUg -5'
7907 3' -52.3 NC_001973.1 + 40173 0.66 0.985247
Target:  5'- cGUGGCccgAGCuGaUCu-GCACGACGGGCa -3'
miRNA:   3'- -CGCCG---UCGuCaAGcuCGUGCUGUUUG- -5'
7907 3' -52.3 NC_001973.1 + 132624 0.66 0.985247
Target:  5'- gGCGaGC-GCGGagcCGAGCACGGUGAGCu -3'
miRNA:   3'- -CGC-CGuCGUCaa-GCUCGUGCUGUUUG- -5'
7907 3' -52.3 NC_001973.1 + 24624 0.66 0.983388
Target:  5'- gGCGGCAggcGCAGUUCaaacAGCaagucaucuACGACGAcGCg -3'
miRNA:   3'- -CGCCGU---CGUCAAGc---UCG---------UGCUGUU-UG- -5'
7907 3' -52.3 NC_001973.1 + 25850 0.66 0.983388
Target:  5'- gGCGcGCAGCAcacgacGUgguGGCACGGCGAAa -3'
miRNA:   3'- -CGC-CGUCGU------CAagcUCGUGCUGUUUg -5'
7907 3' -52.3 NC_001973.1 + 23111 0.66 0.983388
Target:  5'- cCGaGCAcgcGCGGUUCGuGCACcugcACAAGCa -3'
miRNA:   3'- cGC-CGU---CGUCAAGCuCGUGc---UGUUUG- -5'
7907 3' -52.3 NC_001973.1 + 115654 0.66 0.983388
Target:  5'- cGUGGaCAGCcgcGgcUGGGC-CGACGAGCa -3'
miRNA:   3'- -CGCC-GUCGu--CaaGCUCGuGCUGUUUG- -5'
7907 3' -52.3 NC_001973.1 + 69662 0.66 0.983192
Target:  5'- uGCuccGCAGCAcgaggUCGGGCGCGgucgcguGCAGACg -3'
miRNA:   3'- -CGc--CGUCGUca---AGCUCGUGC-------UGUUUG- -5'
7907 3' -52.3 NC_001973.1 + 133477 0.66 0.981356
Target:  5'- aGCGcCAGCGGg-CGAGCACG-CucGCg -3'
miRNA:   3'- -CGCcGUCGUCaaGCUCGUGCuGuuUG- -5'
7907 3' -52.3 NC_001973.1 + 49961 0.66 0.981356
Target:  5'- gGC-GCAGCuGUUCGAGgaCACGAuCAAGu -3'
miRNA:   3'- -CGcCGUCGuCAAGCUC--GUGCU-GUUUg -5'
7907 3' -52.3 NC_001973.1 + 6505 0.66 0.981356
Target:  5'- cCGGCugGGCGGcgCGGGCGugcCGACGAu- -3'
miRNA:   3'- cGCCG--UCGUCaaGCUCGU---GCUGUUug -5'
7907 3' -52.3 NC_001973.1 + 89260 0.66 0.980052
Target:  5'- uCGGCuGUAGUggucuucucggauagUCGuGCAUGACuGACg -3'
miRNA:   3'- cGCCGuCGUCA---------------AGCuCGUGCUGuUUG- -5'
7907 3' -52.3 NC_001973.1 + 84404 0.66 0.979145
Target:  5'- aCGGCGuGCAGUUCGAcaucuugaaGCugaacaaccugcGCGACGAGa -3'
miRNA:   3'- cGCCGU-CGUCAAGCU---------CG------------UGCUGUUUg -5'
7907 3' -52.3 NC_001973.1 + 54991 0.66 0.979145
Target:  5'- gGCGGCGGCAuUUCGcucAGCugGGuuuUAGAUu -3'
miRNA:   3'- -CGCCGUCGUcAAGC---UCGugCU---GUUUG- -5'
7907 3' -52.3 NC_001973.1 + 10747 0.66 0.979145
Target:  5'- aGCGcaucaGCGGCGGgu---GCGCGACGGGCu -3'
miRNA:   3'- -CGC-----CGUCGUCaagcuCGUGCUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.