miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7907 5' -49.6 NC_001973.1 + 61191 0.66 0.998856
Target:  5'- uCGC-UGAacgCGCGCUCGGGcgGG-CGc -3'
miRNA:   3'- cGCGaACUa--GUGCGAGCUUuaCCuGC- -5'
7907 5' -49.6 NC_001973.1 + 38202 0.66 0.998614
Target:  5'- cGCGCUUcGAUCGCGCgccacgCGAuAGUGcaaACGc -3'
miRNA:   3'- -CGCGAA-CUAGUGCGa-----GCU-UUACc--UGC- -5'
7907 5' -49.6 NC_001973.1 + 81065 0.66 0.998137
Target:  5'- uGCGCUUcaguugggacaggucGAUgGCGUUCGcgcUGGGCGc -3'
miRNA:   3'- -CGCGAA---------------CUAgUGCGAGCuuuACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 5990 0.66 0.997998
Target:  5'- gGCGC--GGUCGCGuUUCGAcc-GGACGa -3'
miRNA:   3'- -CGCGaaCUAGUGC-GAGCUuuaCCUGC- -5'
7907 5' -49.6 NC_001973.1 + 76994 0.66 0.997998
Target:  5'- gGCGCcacgcUGAUCAC-CUCGuc--GGGCGg -3'
miRNA:   3'- -CGCGa----ACUAGUGcGAGCuuuaCCUGC- -5'
7907 5' -49.6 NC_001973.1 + 6229 0.66 0.997612
Target:  5'- gGCGCccugucgGAUUGCGCgaaaacgccuguUCGgcGUGGACGu -3'
miRNA:   3'- -CGCGaa-----CUAGUGCG------------AGCuuUACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 6923 0.66 0.997612
Target:  5'- cGCGCUgugGAaCGCGCUgCGcc-UGGACc -3'
miRNA:   3'- -CGCGAa--CUaGUGCGA-GCuuuACCUGc -5'
7907 5' -49.6 NC_001973.1 + 64309 0.66 0.997612
Target:  5'- gGCGCUgaaGAuaaccaaaaacaUCACGCccagcagCGAGAgucUGGACGa -3'
miRNA:   3'- -CGCGAa--CU------------AGUGCGa------GCUUU---ACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 80703 0.67 0.996654
Target:  5'- uGCGCUUGAgCGCGUUC----UGGAUc -3'
miRNA:   3'- -CGCGAACUaGUGCGAGcuuuACCUGc -5'
7907 5' -49.6 NC_001973.1 + 115504 0.67 0.996311
Target:  5'- cGCGC-UGAUCGCGUUCGcgugcaacgugcuGUGGgagcGCGg -3'
miRNA:   3'- -CGCGaACUAGUGCGAGCuu-----------UACC----UGC- -5'
7907 5' -49.6 NC_001973.1 + 137689 0.67 0.995398
Target:  5'- aGCGCaucGUCACGCcCGccguGUGGGCGc -3'
miRNA:   3'- -CGCGaacUAGUGCGaGCuu--UACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 57457 0.67 0.99464
Target:  5'- cGCGCUcugGAUgCGCGCUUGcauuugGGACu -3'
miRNA:   3'- -CGCGAa--CUA-GUGCGAGCuuua--CCUGc -5'
7907 5' -49.6 NC_001973.1 + 106666 0.68 0.993783
Target:  5'- gGCGCUcGA-CGCGCUCGAcGAUcucGACGu -3'
miRNA:   3'- -CGCGAaCUaGUGCGAGCU-UUAc--CUGC- -5'
7907 5' -49.6 NC_001973.1 + 39592 0.68 0.993783
Target:  5'- uGUGCUgcagCAC-CUCGAAcUGGGCGa -3'
miRNA:   3'- -CGCGAacuaGUGcGAGCUUuACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 136760 0.68 0.99282
Target:  5'- cGCGCacgUUGcgCACGCUCGucGUGuacucggucucGACGg -3'
miRNA:   3'- -CGCG---AACuaGUGCGAGCuuUAC-----------CUGC- -5'
7907 5' -49.6 NC_001973.1 + 5769 0.68 0.991741
Target:  5'- gGCGCUa---CGCGCgUCGccGUGGACGa -3'
miRNA:   3'- -CGCGAacuaGUGCG-AGCuuUACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 24247 0.68 0.991035
Target:  5'- cGCGCUgcaagaccugaccgUGAUCuauuguccgcgcggGCGcCUCGGcgAAUGGGCGa -3'
miRNA:   3'- -CGCGA--------------ACUAG--------------UGC-GAGCU--UUACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 106957 0.68 0.989201
Target:  5'- aGCGCgccGggCGCGCUCGgcGUGcGCGc -3'
miRNA:   3'- -CGCGaa-CuaGUGCGAGCuuUACcUGC- -5'
7907 5' -49.6 NC_001973.1 + 44459 0.68 0.989201
Target:  5'- gGCGCUcgggGAUCgaacggGCGCUCGGGcgcGGGCa -3'
miRNA:   3'- -CGCGAa---CUAG------UGCGAGCUUua-CCUGc -5'
7907 5' -49.6 NC_001973.1 + 126287 0.69 0.98609
Target:  5'- gGCGCUcGGUCAUGCUCGA-----GCGc -3'
miRNA:   3'- -CGCGAaCUAGUGCGAGCUuuaccUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.