miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7907 5' -49.6 NC_001973.1 + 2869 0.78 0.679701
Target:  5'- aUGCuUUGAUCACGCUCGGc--GGACGc -3'
miRNA:   3'- cGCG-AACUAGUGCGAGCUuuaCCUGC- -5'
7907 5' -49.6 NC_001973.1 + 60426 0.75 0.826696
Target:  5'- cGCGCUcgcugGAUCA-GCUCGAGccgcagcaguacGUGGACGc -3'
miRNA:   3'- -CGCGAa----CUAGUgCGAGCUU------------UACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 143425 0.75 0.835337
Target:  5'- uGCGCUUGAUCA-GCUCGGcg-GGAa- -3'
miRNA:   3'- -CGCGAACUAGUgCGAGCUuuaCCUgc -5'
7907 5' -49.6 NC_001973.1 + 4010 0.75 0.842107
Target:  5'- cGCGCUUGAacgcgcugagcgCGCGCUCGAacguguacAcgGGGCGc -3'
miRNA:   3'- -CGCGAACUa-----------GUGCGAGCU--------UuaCCUGC- -5'
7907 5' -49.6 NC_001973.1 + 83096 0.75 0.852018
Target:  5'- gGCGCc--GUCGCGCUCaugcAAGUGGACGa -3'
miRNA:   3'- -CGCGaacUAGUGCGAGc---UUUACCUGC- -5'
7907 5' -49.6 NC_001973.1 + 72888 0.74 0.875426
Target:  5'- cGCGCUcUGAaCGCGCUCGuc--GGGCGc -3'
miRNA:   3'- -CGCGA-ACUaGUGCGAGCuuuaCCUGC- -5'
7907 5' -49.6 NC_001973.1 + 134337 0.73 0.909736
Target:  5'- gGCGUguacgUGGUgGCGCUCGAcgccgagGGGCGa -3'
miRNA:   3'- -CGCGa----ACUAgUGCGAGCUuua----CCUGC- -5'
7907 5' -49.6 NC_001973.1 + 33371 0.72 0.932678
Target:  5'- cGCGauccgGAUCACGUUCGAGGccGACGa -3'
miRNA:   3'- -CGCgaa--CUAGUGCGAGCUUUacCUGC- -5'
7907 5' -49.6 NC_001973.1 + 106124 0.71 0.951553
Target:  5'- -aGUUUGAUCGCucggcaguucGCUCGAAGcGGAUGa -3'
miRNA:   3'- cgCGAACUAGUG----------CGAGCUUUaCCUGC- -5'
7907 5' -49.6 NC_001973.1 + 62364 0.71 0.959503
Target:  5'- aGCGCcgcacgUGAUCGUGUUCGAccUGGACa -3'
miRNA:   3'- -CGCGa-----ACUAGUGCGAGCUuuACCUGc -5'
7907 5' -49.6 NC_001973.1 + 28314 0.71 0.963121
Target:  5'- gGCGCaaaccucgUUGAUCAUGaUCGggGUGGAa- -3'
miRNA:   3'- -CGCG--------AACUAGUGCgAGCuuUACCUgc -5'
7907 5' -49.6 NC_001973.1 + 65187 0.7 0.972608
Target:  5'- gGCGCUcaacuaCAUGCUCGAcAUGGGCc -3'
miRNA:   3'- -CGCGAacua--GUGCGAGCUuUACCUGc -5'
7907 5' -49.6 NC_001973.1 + 133457 0.7 0.972608
Target:  5'- gGCGCgcgGGUCGCGCaCGGAGcgccagcGGGCGa -3'
miRNA:   3'- -CGCGaa-CUAGUGCGaGCUUUa------CCUGC- -5'
7907 5' -49.6 NC_001973.1 + 45787 0.7 0.975338
Target:  5'- cGCGCgaaAUCAUGCUCGAGGcGG-CGu -3'
miRNA:   3'- -CGCGaacUAGUGCGAGCUUUaCCuGC- -5'
7907 5' -49.6 NC_001973.1 + 65625 0.7 0.975338
Target:  5'- cGCGCUagcgccGAgCGCGCUCGAGcaGGGCu -3'
miRNA:   3'- -CGCGAa-----CUaGUGCGAGCUUuaCCUGc -5'
7907 5' -49.6 NC_001973.1 + 109651 0.7 0.977864
Target:  5'- cGCGCUguacGAUacgAUGCUCGAAAaguuUGGGCu -3'
miRNA:   3'- -CGCGAa---CUAg--UGCGAGCUUU----ACCUGc -5'
7907 5' -49.6 NC_001973.1 + 41798 0.69 0.980193
Target:  5'- gGCGCgagUGGg--UGCUCGAcGUGGACu -3'
miRNA:   3'- -CGCGa--ACUaguGCGAGCUuUACCUGc -5'
7907 5' -49.6 NC_001973.1 + 42883 0.69 0.982129
Target:  5'- gGCGCgUGAUCugcaGCGCgugucacUCGGAccGGACGa -3'
miRNA:   3'- -CGCGaACUAG----UGCG-------AGCUUuaCCUGC- -5'
7907 5' -49.6 NC_001973.1 + 126287 0.69 0.98609
Target:  5'- gGCGCUcGGUCAUGCUCGA-----GCGc -3'
miRNA:   3'- -CGCGAaCUAGUGCGAGCUuuaccUGC- -5'
7907 5' -49.6 NC_001973.1 + 106957 0.68 0.989201
Target:  5'- aGCGCgccGggCGCGCUCGgcGUGcGCGc -3'
miRNA:   3'- -CGCGaa-CuaGUGCGAGCuuUACcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.