miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
791 5' -58.6 NC_000855.1 + 7574 0.66 0.169014
Target:  5'- gCAGGgaauCCUUCUucagaaaGGGGAGUCCACa--- -3'
miRNA:   3'- gGUCC----GGAAGG-------UCCCUCAGGUGacgc -5'
791 5' -58.6 NC_000855.1 + 11097 0.67 0.150263
Target:  5'- gCCuguGGCCUggcgcCCAcGGGAGUUCACcugGCc -3'
miRNA:   3'- -GGu--CCGGAa----GGU-CCCUCAGGUGa--CGc -5'
791 5' -58.6 NC_000855.1 + 6935 0.68 0.120178
Target:  5'- aCCuGGCCUugaacgucaccagaUCUGGGGGGU-CACUGgCGg -3'
miRNA:   3'- -GGuCCGGA--------------AGGUCCCUCAgGUGAC-GC- -5'
791 5' -58.6 NC_000855.1 + 1136 1.09 0.000042
Target:  5'- uCCAGGCCUUCCAGGGAGUCCACUGCGu -3'
miRNA:   3'- -GGUCCGGAAGGUCCCUCAGGUGACGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.