miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 3' -53 NC_001973.1 + 25792 0.66 0.971614
Target:  5'- ----gACGC--GCCGCUccaCCGGCGCg -3'
miRNA:   3'- aaaaaUGCGaaCGGCGGca-GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 137835 0.66 0.971614
Target:  5'- ----cGCGCggcGCCGCCaUCagcgGGCGCa -3'
miRNA:   3'- aaaaaUGCGaa-CGGCGGcAGg---CUGCG- -5'
7911 3' -53 NC_001973.1 + 90098 0.66 0.968636
Target:  5'- ----gGCGaCUUGCCGgCG-CCGAaaaGCu -3'
miRNA:   3'- aaaaaUGC-GAACGGCgGCaGGCUg--CG- -5'
7911 3' -53 NC_001973.1 + 95668 0.66 0.968636
Target:  5'- ----cGCGCUguacgcGCCGUCGUggcggcCCGACGa -3'
miRNA:   3'- aaaaaUGCGAa-----CGGCGGCA------GGCUGCg -5'
7911 3' -53 NC_001973.1 + 7083 0.66 0.968636
Target:  5'- ----aGCGCgaGuuGa-GUCCGGCGCg -3'
miRNA:   3'- aaaaaUGCGaaCggCggCAGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 38528 0.66 0.968636
Target:  5'- ----aGCGCgagGCCGUCG-CaaaGGCGCu -3'
miRNA:   3'- aaaaaUGCGaa-CGGCGGCaGg--CUGCG- -5'
7911 3' -53 NC_001973.1 + 69051 0.66 0.968636
Target:  5'- ---aUGCGCUacggcacgcUGCaCGCCa-CCGugGCg -3'
miRNA:   3'- aaaaAUGCGA---------ACG-GCGGcaGGCugCG- -5'
7911 3' -53 NC_001973.1 + 96821 0.66 0.968636
Target:  5'- ---gUACGCggcGCuCGCCGgcgCCGACu- -3'
miRNA:   3'- aaaaAUGCGaa-CG-GCGGCa--GGCUGcg -5'
7911 3' -53 NC_001973.1 + 133338 0.66 0.968636
Target:  5'- ----cGCGCgacGCCGaCCGUCgCGAaccCGCu -3'
miRNA:   3'- aaaaaUGCGaa-CGGC-GGCAG-GCU---GCG- -5'
7911 3' -53 NC_001973.1 + 158031 0.66 0.968636
Target:  5'- ---gUGCGCc-GCCGCCGcgcCCGuGCGUa -3'
miRNA:   3'- aaaaAUGCGaaCGGCGGCa--GGC-UGCG- -5'
7911 3' -53 NC_001973.1 + 46097 0.66 0.968636
Target:  5'- ---gUGCGCUacgGCCGCgUGcCCG-CGCu -3'
miRNA:   3'- aaaaAUGCGAa--CGGCG-GCaGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 3218 0.66 0.968327
Target:  5'- -----uCGCUcaaauccUGCaCGCCGUUCGcCGCg -3'
miRNA:   3'- aaaaauGCGA-------ACG-GCGGCAGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 38577 0.66 0.965443
Target:  5'- ----aGCGCacgauUCGCCG-CCGGCGCa -3'
miRNA:   3'- aaaaaUGCGaac--GGCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 6242 0.66 0.965443
Target:  5'- --aUUGCGCgaaaaCGCCuGUUCGGCGUg -3'
miRNA:   3'- aaaAAUGCGaacg-GCGG-CAGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 80076 0.66 0.965443
Target:  5'- cUUUgcgGCGCUUgGCCGUCGU-CGAgGUc -3'
miRNA:   3'- aAAAa--UGCGAA-CGGCGGCAgGCUgCG- -5'
7911 3' -53 NC_001973.1 + 52079 0.66 0.965443
Target:  5'- --cUUGCGCUUGgcgacgaacUCGCCGa-UGACGCg -3'
miRNA:   3'- aaaAAUGCGAAC---------GGCGGCagGCUGCG- -5'
7911 3' -53 NC_001973.1 + 158764 0.66 0.965443
Target:  5'- ----aGCGCgcGCCGaccuacaCGcCCGACGCc -3'
miRNA:   3'- aaaaaUGCGaaCGGCg------GCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 39720 0.66 0.965443
Target:  5'- ----aGCGCg-GCCGCCauGUCCG-CGUc -3'
miRNA:   3'- aaaaaUGCGaaCGGCGG--CAGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 144351 0.67 0.962379
Target:  5'- ---aUGCGCgaggacgaggacgaGCCGCCG-CCGcCGCc -3'
miRNA:   3'- aaaaAUGCGaa------------CGGCGGCaGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 42953 0.67 0.962027
Target:  5'- ----cGCGCUcGUcccagCGCCGUC-GACGCg -3'
miRNA:   3'- aaaaaUGCGAaCG-----GCGGCAGgCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.