miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 5' -58.7 NC_001973.1 + 130699 0.66 0.81995
Target:  5'- gAGcuCGGCGGACGCGUaggauuuuacgcgUCGGCcGgGGCa -3'
miRNA:   3'- -UCc-GCCGCUUGCGCA-------------GGUCGuUgCCG- -5'
7911 5' -58.7 NC_001973.1 + 140032 0.66 0.815743
Target:  5'- cGGUGGCGGGCuGCGcCCGGgCGcucgacgagaccaucGCGGa -3'
miRNA:   3'- uCCGCCGCUUG-CGCaGGUC-GU---------------UGCCg -5'
7911 5' -58.7 NC_001973.1 + 31061 0.66 0.815743
Target:  5'- cGGCGGgcaGcgUGCGgaucgagaaguuggCCAGCGAgGGCg -3'
miRNA:   3'- uCCGCCg--CuuGCGCa-------------GGUCGUUgCCG- -5'
7911 5' -58.7 NC_001973.1 + 10172 0.66 0.812348
Target:  5'- cGGGUGGuCGAcccgcacgaaGC-CGUCgCGGC-ACGGCg -3'
miRNA:   3'- -UCCGCC-GCU----------UGcGCAG-GUCGuUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 94298 0.66 0.812348
Target:  5'- aAGGCGGCGcGCcCGccaUCgAGCAG-GGCa -3'
miRNA:   3'- -UCCGCCGCuUGcGC---AGgUCGUUgCCG- -5'
7911 5' -58.7 NC_001973.1 + 100195 0.66 0.812348
Target:  5'- aGGGCGaGC-AACucgGCuuuGUCgGGCGGCGGCa -3'
miRNA:   3'- -UCCGC-CGcUUG---CG---CAGgUCGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 36321 0.66 0.812348
Target:  5'- -cGCGGCcGACGCGgccgacgCgGGCcuCGGCg -3'
miRNA:   3'- ucCGCCGcUUGCGCa------GgUCGuuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 150947 0.66 0.811496
Target:  5'- gAGGUcagacucgagcucGGCGGACGCGuaaaaUCCuacGCGuCGGCc -3'
miRNA:   3'- -UCCG-------------CCGCUUGCGC-----AGGu--CGUuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 76638 0.66 0.811496
Target:  5'- cAGGCGGUGGccaccaacACGCccauuccgcugccGUucacCCAGCAGCuGGCc -3'
miRNA:   3'- -UCCGCCGCU--------UGCG-------------CA----GGUCGUUG-CCG- -5'
7911 5' -58.7 NC_001973.1 + 96050 0.66 0.803755
Target:  5'- uGGGCGGUcuguuCGCGUgggagaucgacgCCGaCAACGGCg -3'
miRNA:   3'- -UCCGCCGcuu--GCGCA------------GGUcGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 137322 0.66 0.803755
Target:  5'- uAGGCgGGCGGGCGCG-CgC-GCGACGa- -3'
miRNA:   3'- -UCCG-CCGCUUGCGCaG-GuCGUUGCcg -5'
7911 5' -58.7 NC_001973.1 + 42875 0.66 0.803755
Target:  5'- cGaGCGGCG-GCGCGUgaUCuGCAGCGcGUg -3'
miRNA:   3'- uC-CGCCGCuUGCGCA--GGuCGUUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 77367 0.66 0.803755
Target:  5'- -cGCGGCc-GCGCGcCCGcGCGcCGGCg -3'
miRNA:   3'- ucCGCCGcuUGCGCaGGU-CGUuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 14016 0.66 0.795014
Target:  5'- cGGUGGCGGGCgGCGU-CGGCGucGCGuuuGCu -3'
miRNA:   3'- uCCGCCGCUUG-CGCAgGUCGU--UGC---CG- -5'
7911 5' -58.7 NC_001973.1 + 76956 0.66 0.795014
Target:  5'- uGGCcaccaaGGCGGGCaaGCGUCCcgaccuguuCAGCGGCg -3'
miRNA:   3'- uCCG------CCGCUUG--CGCAGGuc-------GUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 97801 0.66 0.795014
Target:  5'- gAGcGCGagucucugauGCGAACGUGUUCGGgCucGCGGCu -3'
miRNA:   3'- -UC-CGC----------CGCUUGCGCAGGUC-Gu-UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 117837 0.66 0.795014
Target:  5'- aAGGCGGUGcugcugUGCG-CCAGCcgcucguacuGCGGCc -3'
miRNA:   3'- -UCCGCCGCuu----GCGCaGGUCGu---------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 123283 0.66 0.795014
Target:  5'- cAGGCcgGGCaGGCGCGgCCAGCGcACcGCg -3'
miRNA:   3'- -UCCG--CCGcUUGCGCaGGUCGU-UGcCG- -5'
7911 5' -58.7 NC_001973.1 + 152434 0.66 0.795014
Target:  5'- gGGGCGGC--GCGCaggCUuaucgcGCGGCGGCu -3'
miRNA:   3'- -UCCGCCGcuUGCGca-GGu-----CGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 8174 0.66 0.795014
Target:  5'- cGGCGGgucgacggaCGAGCGCG-CCG---ACGGCa -3'
miRNA:   3'- uCCGCC---------GCUUGCGCaGGUcguUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.