miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7913 3' -58.1 NC_001973.1 + 38919 0.66 0.872639
Target:  5'- uCGAAUGucgaGCGCgCGCGGUuuGA--ACCg -3'
miRNA:   3'- -GCUUAC----CGUGgGCGCCGggCUguUGG- -5'
7913 3' -58.1 NC_001973.1 + 115764 0.66 0.865438
Target:  5'- uCGAAU-GCugCCGCaGCgCG-CGGCCg -3'
miRNA:   3'- -GCUUAcCGugGGCGcCGgGCuGUUGG- -5'
7913 3' -58.1 NC_001973.1 + 69918 0.66 0.865438
Target:  5'- aCGAccaGGC-CgCCGCGGCgCGugAGCa -3'
miRNA:   3'- -GCUua-CCGuG-GGCGCCGgGCugUUGg -5'
7913 3' -58.1 NC_001973.1 + 112734 0.66 0.865438
Target:  5'- uGAucGUcGUAUUCGCGGCgaaCGGCGACCg -3'
miRNA:   3'- gCU--UAcCGUGGGCGCCGg--GCUGUUGG- -5'
7913 3' -58.1 NC_001973.1 + 103289 0.66 0.861022
Target:  5'- gCGAGUGGCugCCguucGCGGacgccaacgauuaCGACAccACCa -3'
miRNA:   3'- -GCUUACCGugGG----CGCCgg-----------GCUGU--UGG- -5'
7913 3' -58.1 NC_001973.1 + 120742 0.66 0.858039
Target:  5'- cCGuGUGGCGCgCGCaGCCgcCGACGuguuCCg -3'
miRNA:   3'- -GCuUACCGUGgGCGcCGG--GCUGUu---GG- -5'
7913 3' -58.1 NC_001973.1 + 45826 0.66 0.850446
Target:  5'- -uAGUGuGCGCCggCGCGGCguUCGugGGCCu -3'
miRNA:   3'- gcUUAC-CGUGG--GCGCCG--GGCugUUGG- -5'
7913 3' -58.1 NC_001973.1 + 65955 0.66 0.850446
Target:  5'- aGGcUGGUGgUCGCGcGCCaCGACGACg -3'
miRNA:   3'- gCUuACCGUgGGCGC-CGG-GCUGUUGg -5'
7913 3' -58.1 NC_001973.1 + 55816 0.66 0.849677
Target:  5'- uCGAAcGGCgacagagGCCUGCGGaCCGGCGAg- -3'
miRNA:   3'- -GCUUaCCG-------UGGGCGCCgGGCUGUUgg -5'
7913 3' -58.1 NC_001973.1 + 17577 0.66 0.842667
Target:  5'- gGAAUcGGCGCCCGaguCGGCgugCUGGCAuauuuCCg -3'
miRNA:   3'- gCUUA-CCGUGGGC---GCCG---GGCUGUu----GG- -5'
7913 3' -58.1 NC_001973.1 + 28896 0.66 0.842667
Target:  5'- ---cUGGCGCacuaUGCGGUCCaGCAGCUc -3'
miRNA:   3'- gcuuACCGUGg---GCGCCGGGcUGUUGG- -5'
7913 3' -58.1 NC_001973.1 + 92271 0.66 0.842667
Target:  5'- -aGAUGGCGCCacaagguGgGGCCUaGACGGCUc -3'
miRNA:   3'- gcUUACCGUGGg------CgCCGGG-CUGUUGG- -5'
7913 3' -58.1 NC_001973.1 + 14122 0.66 0.842667
Target:  5'- aCGGAUacGGC-CCC-CGGUCCGcCGACUc -3'
miRNA:   3'- -GCUUA--CCGuGGGcGCCGGGCuGUUGG- -5'
7913 3' -58.1 NC_001973.1 + 44587 0.66 0.842667
Target:  5'- --cGUGuaGCCCGCGGCggCGGCGAgCg -3'
miRNA:   3'- gcuUACcgUGGGCGCCGg-GCUGUUgG- -5'
7913 3' -58.1 NC_001973.1 + 152354 0.66 0.842667
Target:  5'- gCGAua-GCGCCgCGCGaaugagcgaGCCgGACGGCCg -3'
miRNA:   3'- -GCUuacCGUGG-GCGC---------CGGgCUGUUGG- -5'
7913 3' -58.1 NC_001973.1 + 24139 0.66 0.841879
Target:  5'- gCGggUGcGCGCgCCGCccgccucGGCgCUGGCGcuGCCg -3'
miRNA:   3'- -GCuuAC-CGUG-GGCG-------CCG-GGCUGU--UGG- -5'
7913 3' -58.1 NC_001973.1 + 121679 0.66 0.834706
Target:  5'- ----cGGCGCCCggauaccgguacGCGaGCUCGGCGGCg -3'
miRNA:   3'- gcuuaCCGUGGG------------CGC-CGGGCUGUUGg -5'
7913 3' -58.1 NC_001973.1 + 104238 0.66 0.834706
Target:  5'- ----cGGCGCgCUGCGcGUCCGuCAGCUg -3'
miRNA:   3'- gcuuaCCGUG-GGCGC-CGGGCuGUUGG- -5'
7913 3' -58.1 NC_001973.1 + 93582 0.66 0.834706
Target:  5'- uGAGcGGUcgcguaguGCCCGCgcuggcggacaGGCCCGACAAg- -3'
miRNA:   3'- gCUUaCCG--------UGGGCG-----------CCGGGCUGUUgg -5'
7913 3' -58.1 NC_001973.1 + 151171 0.66 0.834706
Target:  5'- aGAAUGGgGCCCu--GCCCGGuCAgaGCCg -3'
miRNA:   3'- gCUUACCgUGGGcgcCGGGCU-GU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.