miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7913 5' -58 NC_001973.1 + 139723 0.66 0.846693
Target:  5'- cGGACGuGCUG-CGCaacccGCGcGCGCAg -3'
miRNA:   3'- aCCUGCuCGGCuGCGa----CGCuUGCGUa -5'
7913 5' -58 NC_001973.1 + 56460 0.66 0.846693
Target:  5'- gGGGCGGGCuCGGCGCcaagcucggGCGGG-GCGg -3'
miRNA:   3'- aCCUGCUCG-GCUGCGa--------CGCUUgCGUa -5'
7913 5' -58 NC_001973.1 + 56514 0.66 0.846693
Target:  5'- gGGGCGGGCuCGGCGCcaagcucggGCGGG-GCGg -3'
miRNA:   3'- aCCUGCUCG-GCUGCGa--------CGCUUgCGUa -5'
7913 5' -58 NC_001973.1 + 8174 0.66 0.846693
Target:  5'- -cGGCGGGUCGACGga-CGAGCGCGc -3'
miRNA:   3'- acCUGCUCGGCUGCgacGCUUGCGUa -5'
7913 5' -58 NC_001973.1 + 22494 0.66 0.846693
Target:  5'- cGGACGAgGCUGcCG-UGCGuGCGCGa -3'
miRNA:   3'- aCCUGCU-CGGCuGCgACGCuUGCGUa -5'
7913 5' -58 NC_001973.1 + 39932 0.66 0.846693
Target:  5'- --aGCaGGCgGACGC-GCGAGCGCAa -3'
miRNA:   3'- accUGcUCGgCUGCGaCGCUUGCGUa -5'
7913 5' -58 NC_001973.1 + 24543 0.66 0.845901
Target:  5'- cGGGCGAgaagcucGCCGACGaguucCUGgGcAACGCGUu -3'
miRNA:   3'- aCCUGCU-------CGGCUGC-----GACgC-UUGCGUA- -5'
7913 5' -58 NC_001973.1 + 117538 0.66 0.845901
Target:  5'- cGGugGGGgugucguCCGACGCggacgacgacUGCGAguggGCGCGUu -3'
miRNA:   3'- aCCugCUC-------GGCUGCG----------ACGCU----UGCGUA- -5'
7913 5' -58 NC_001973.1 + 158845 0.66 0.838679
Target:  5'- cGGACGAGCCGcccaaaccgaGCUcGCGAGCcccGCu- -3'
miRNA:   3'- aCCUGCUCGGCug--------CGA-CGCUUG---CGua -5'
7913 5' -58 NC_001973.1 + 97974 0.66 0.838679
Target:  5'- gGGcACGGGCaCGACGCggucgcggucgGCGAcguccACGCGc -3'
miRNA:   3'- aCC-UGCUCG-GCUGCGa----------CGCU-----UGCGUa -5'
7913 5' -58 NC_001973.1 + 141112 0.66 0.830481
Target:  5'- cGGAcCGAGCUGaACGCcgGCucGACGCAc -3'
miRNA:   3'- aCCU-GCUCGGC-UGCGa-CGc-UUGCGUa -5'
7913 5' -58 NC_001973.1 + 24666 0.66 0.830481
Target:  5'- cGGACaggcGGCCGACGCUGaacaccaAGCGCc- -3'
miRNA:   3'- aCCUGc---UCGGCUGCGACgc-----UUGCGua -5'
7913 5' -58 NC_001973.1 + 44545 0.66 0.822106
Target:  5'- -cGACGAgcGCCGGCGCUGCaauuuauaGGCGCc- -3'
miRNA:   3'- acCUGCU--CGGCUGCGACGc-------UUGCGua -5'
7913 5' -58 NC_001973.1 + 35674 0.66 0.822106
Target:  5'- cGGcGCG-GCCGACgGCggcGCGGugGCGg -3'
miRNA:   3'- aCC-UGCuCGGCUG-CGa--CGCUugCGUa -5'
7913 5' -58 NC_001973.1 + 32325 0.66 0.822106
Target:  5'- aGGGCGuccGCgGGCG-UGCGAaaGCGCAc -3'
miRNA:   3'- aCCUGCu--CGgCUGCgACGCU--UGCGUa -5'
7913 5' -58 NC_001973.1 + 109546 0.66 0.822106
Target:  5'- gGGcGCGAGCCG-CGCgaacGCcGGCGCGg -3'
miRNA:   3'- aCC-UGCUCGGCuGCGa---CGcUUGCGUa -5'
7913 5' -58 NC_001973.1 + 39444 0.66 0.813562
Target:  5'- aGGGCGAcGCCGAUGCccaGCucGACGUAUc -3'
miRNA:   3'- aCCUGCU-CGGCUGCGa--CGc-UUGCGUA- -5'
7913 5' -58 NC_001973.1 + 40454 0.66 0.813562
Target:  5'- gUGGucaaGuuGCCGGCGUUGCGAuugaaaucgacGCGCGUc -3'
miRNA:   3'- -ACCug--Cu-CGGCUGCGACGCU-----------UGCGUA- -5'
7913 5' -58 NC_001973.1 + 54242 0.66 0.813562
Target:  5'- aUGG-CGAGCUgGAUGUaGCGcAACGCGUg -3'
miRNA:   3'- -ACCuGCUCGG-CUGCGaCGC-UUGCGUA- -5'
7913 5' -58 NC_001973.1 + 7437 0.66 0.813562
Target:  5'- aGGACucgcacguGAGCuCGGCGgUGCG-GCGCGa -3'
miRNA:   3'- aCCUG--------CUCG-GCUGCgACGCuUGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.