miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7927 5' -60.3 NC_001973.1 + 121534 0.66 0.775784
Target:  5'- aGCUUGcccaccacCGAGCgGCGuCGGCGCGUGUg -3'
miRNA:   3'- cUGAGCu-------GCUUG-CGC-GCCGCGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 74349 0.66 0.775784
Target:  5'- uGGC-CGGCG-GCGCaGCGGCGCacCGCc -3'
miRNA:   3'- -CUGaGCUGCuUGCG-CGCCGCGc-GCGa -5'
7927 5' -60.3 NC_001973.1 + 59902 0.66 0.775784
Target:  5'- gGugUCGGCcAACGCGagccaGcCGCGCGCc -3'
miRNA:   3'- -CugAGCUGcUUGCGCg----CcGCGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 133109 0.66 0.775784
Target:  5'- gGACguggaGAgGAGCGCGCGuuugaGCGCGgGUa -3'
miRNA:   3'- -CUGag---CUgCUUGCGCGC-----CGCGCgCGa -5'
7927 5' -60.3 NC_001973.1 + 121177 0.66 0.775784
Target:  5'- aGAC-CGACGAGCGCGaaccGCGCGauCUc -3'
miRNA:   3'- -CUGaGCUGCUUGCGCgc--CGCGCgcGA- -5'
7927 5' -60.3 NC_001973.1 + 31748 0.66 0.775784
Target:  5'- ----gGugGGcCGUGCcGCGCGCGCUg -3'
miRNA:   3'- cugagCugCUuGCGCGcCGCGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 101140 0.66 0.77308
Target:  5'- aGCUCGuguuggagcugagcACGAGCGCGCaGuCGUGCaGCa -3'
miRNA:   3'- cUGAGC--------------UGCUUGCGCGcC-GCGCG-CGa -5'
7927 5' -60.3 NC_001973.1 + 68947 0.66 0.766732
Target:  5'- uGCUCGGCGucgaGCGCGuCGaaguaGCGCUg -3'
miRNA:   3'- cUGAGCUGCuug-CGCGCcGCg----CGCGA- -5'
7927 5' -60.3 NC_001973.1 + 31039 0.66 0.766732
Target:  5'- uGCUCGAgcgucUGAACGcCGaCGGCGgGCaGCg -3'
miRNA:   3'- cUGAGCU-----GCUUGC-GC-GCCGCgCG-CGa -5'
7927 5' -60.3 NC_001973.1 + 94646 0.66 0.766732
Target:  5'- cGugUCGugGAGCGUGUacacgGGCGagcCGgGCg -3'
miRNA:   3'- -CugAGCugCUUGCGCG-----CCGC---GCgCGa -5'
7927 5' -60.3 NC_001973.1 + 101204 0.66 0.766732
Target:  5'- --aUUGGCGcGCGgGCGGCGCuucuggucGCGCc -3'
miRNA:   3'- cugAGCUGCuUGCgCGCCGCG--------CGCGa -5'
7927 5' -60.3 NC_001973.1 + 56190 0.66 0.763994
Target:  5'- cGCUCGACGuagucgcuuucgucGGCGU-CGGCGCcggGCGCg -3'
miRNA:   3'- cUGAGCUGC--------------UUGCGcGCCGCG---CGCGa -5'
7927 5' -60.3 NC_001973.1 + 28654 0.66 0.757568
Target:  5'- aGCUgCG-CGAGCGCgGCGucgaGCGCGCUg -3'
miRNA:   3'- cUGA-GCuGCUUGCG-CGCcg--CGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 81033 0.66 0.757568
Target:  5'- cGACggCGguauGCGGGcCGCGUcgacgGGCGUGCGCUu -3'
miRNA:   3'- -CUGa-GC----UGCUU-GCGCG-----CCGCGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 89102 0.66 0.757568
Target:  5'- --gUCGuCGAGCucCGCGG-GCGCGCUc -3'
miRNA:   3'- cugAGCuGCUUGc-GCGCCgCGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 100369 0.66 0.757568
Target:  5'- cACUCGACGAcguagccuCGCGCGuCGC-CGCc -3'
miRNA:   3'- cUGAGCUGCUu-------GCGCGCcGCGcGCGa -5'
7927 5' -60.3 NC_001973.1 + 121642 0.66 0.756646
Target:  5'- uGGC-CGACGcGCGcCGCcucgaagGGCGCGuCGCUc -3'
miRNA:   3'- -CUGaGCUGCuUGC-GCG-------CCGCGC-GCGA- -5'
7927 5' -60.3 NC_001973.1 + 123499 0.66 0.748302
Target:  5'- cGGCUCGuCGcacaccacGGCGCGCucgccGGCGCaGUGCa -3'
miRNA:   3'- -CUGAGCuGC--------UUGCGCG-----CCGCG-CGCGa -5'
7927 5' -60.3 NC_001973.1 + 75526 0.66 0.748302
Target:  5'- aGAUUCGaacGCGGACa-GCGGCuCGCGCa -3'
miRNA:   3'- -CUGAGC---UGCUUGcgCGCCGcGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 65561 0.66 0.748302
Target:  5'- -uCUCGuCGcGCGCGCuGCGCGaGCUc -3'
miRNA:   3'- cuGAGCuGCuUGCGCGcCGCGCgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.