miRNA display CGI


Results 1 - 20 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7927 5' -60.3 NC_001973.1 + 2803 0.68 0.612315
Target:  5'- aGCUCGGCGGACGCGUaGGauuuuaCGCGUc -3'
miRNA:   3'- cUGAGCUGCUUGCGCG-CCgc----GCGCGa -5'
7927 5' -60.3 NC_001973.1 + 2881 0.83 0.081228
Target:  5'- cGCUCGGCGGACGCGCGuCGuCGCGCUu -3'
miRNA:   3'- cUGAGCUGCUUGCGCGCcGC-GCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 3561 0.74 0.316542
Target:  5'- aGC-CGGCgGGGCGCGCgaugaccgacGGCGCGCGCUu -3'
miRNA:   3'- cUGaGCUG-CUUGCGCG----------CCGCGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 3715 0.67 0.661622
Target:  5'- --gUCG-CGAcCGCGCGGCaCGUGCa -3'
miRNA:   3'- cugAGCuGCUuGCGCGCCGcGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 3747 0.7 0.496785
Target:  5'- cGC-CGACGGgcACGUGCGaaccgaaccGCGCGCGCg -3'
miRNA:   3'- cUGaGCUGCU--UGCGCGC---------CGCGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 4007 0.72 0.408528
Target:  5'- gGACgCGcuUGAACGCGCuGaGCGCGCGCUc -3'
miRNA:   3'- -CUGaGCu-GCUUGCGCG-C-CGCGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 4311 0.7 0.506094
Target:  5'- --gUCGAUGAGCGCGCccaGCcCGCGCUc -3'
miRNA:   3'- cugAGCUGCUUGCGCGc--CGcGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 5061 0.69 0.58284
Target:  5'- aGCgucaagCGGgGGacGCGCGCGGCGuUGCGCa -3'
miRNA:   3'- cUGa-----GCUgCU--UGCGCGCCGC-GCGCGa -5'
7927 5' -60.3 NC_001973.1 + 5873 0.66 0.748302
Target:  5'- -uCUCGAgaGGCugGUGCGGCGCaGCGCg -3'
miRNA:   3'- cuGAGCUgcUUG--CGCGCCGCG-CGCGa -5'
7927 5' -60.3 NC_001973.1 + 5918 0.66 0.73894
Target:  5'- -cCUCG-CGucGCcCGCGGuCGCGCGCa -3'
miRNA:   3'- cuGAGCuGCu-UGcGCGCC-GCGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 6027 0.86 0.055076
Target:  5'- cGCUCGACGAGCGCGCuccguugacGCGCGCGCUc -3'
miRNA:   3'- cUGAGCUGCUUGCGCGc--------CGCGCGCGA- -5'
7927 5' -60.3 NC_001973.1 + 6402 0.66 0.719965
Target:  5'- -uUUUGAUGGccgaguGCGCgGCGGCGgCGCGCc -3'
miRNA:   3'- cuGAGCUGCU------UGCG-CGCCGC-GCGCGa -5'
7927 5' -60.3 NC_001973.1 + 6925 0.67 0.671447
Target:  5'- cGCU-GugGAACGCGCuGCGCcuggaccgGCGCa -3'
miRNA:   3'- cUGAgCugCUUGCGCGcCGCG--------CGCGa -5'
7927 5' -60.3 NC_001973.1 + 7075 0.72 0.384014
Target:  5'- -cCUgGuCGAGCGCGaguugagucCGGCGCGCGCg -3'
miRNA:   3'- cuGAgCuGCUUGCGC---------GCCGCGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 7268 0.75 0.276752
Target:  5'- gGGCUCG----GCGCGCGGCGCGCccGCUa -3'
miRNA:   3'- -CUGAGCugcuUGCGCGCCGCGCG--CGA- -5'
7927 5' -60.3 NC_001973.1 + 7451 0.67 0.671447
Target:  5'- aGCUCGGCG---GUGCGGCGCGaCGa- -3'
miRNA:   3'- cUGAGCUGCuugCGCGCCGCGC-GCga -5'
7927 5' -60.3 NC_001973.1 + 7826 0.68 0.612315
Target:  5'- cGCUCucuguugaGAACGgGCGGCGCcGCGCc -3'
miRNA:   3'- cUGAGcug-----CUUGCgCGCCGCG-CGCGa -5'
7927 5' -60.3 NC_001973.1 + 7941 0.67 0.661622
Target:  5'- cGGC-CGGCGuggugcACGCGCccGCGUGCGCg -3'
miRNA:   3'- -CUGaGCUGCu-----UGCGCGc-CGCGCGCGa -5'
7927 5' -60.3 NC_001973.1 + 8182 0.72 0.422846
Target:  5'- cGACg-GACGAGCGCGCcgacggcaccgcuuGGCGC-CGCUg -3'
miRNA:   3'- -CUGagCUGCUUGCGCG--------------CCGCGcGCGA- -5'
7927 5' -60.3 NC_001973.1 + 9098 0.68 0.651775
Target:  5'- aGCUCGGCGcgcaucCGCGCcGCGuUGCGCUc -3'
miRNA:   3'- cUGAGCUGCuu----GCGCGcCGC-GCGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.