miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7929 3' -59.3 NC_001973.1 + 137827 0.66 0.818684
Target:  5'- -cAGGUCGUcgCGCGGCgCCGCcaucaGCGGGc -3'
miRNA:   3'- acUUCAGCA--GCGCCG-GGCGcg---UGCUC- -5'
7929 3' -59.3 NC_001973.1 + 75531 0.66 0.818684
Target:  5'- cGAAcgCGgacaGCGGCUCGCGCAgCGAa -3'
miRNA:   3'- aCUUcaGCag--CGCCGGGCGCGU-GCUc -5'
7929 3' -59.3 NC_001973.1 + 99150 0.66 0.813651
Target:  5'- cGAAGUacacccuguaccguuUGUCGC-GCCCGCGCgGCGc- -3'
miRNA:   3'- aCUUCA---------------GCAGCGcCGGGCGCG-UGCuc -5'
7929 3' -59.3 NC_001973.1 + 56209 0.66 0.810266
Target:  5'- ---cGUCGgCGuCGGCgCCGgGCGCGAu -3'
miRNA:   3'- acuuCAGCaGC-GCCG-GGCgCGUGCUc -5'
7929 3' -59.3 NC_001973.1 + 101553 0.66 0.810266
Target:  5'- uUGggGUgGcgCGUGGUCCaggcGCGCACGu- -3'
miRNA:   3'- -ACuuCAgCa-GCGCCGGG----CGCGUGCuc -5'
7929 3' -59.3 NC_001973.1 + 45562 0.66 0.810266
Target:  5'- uUGAAGUUGacgCGCGGCaaCCGCucCAUGGGc -3'
miRNA:   3'- -ACUUCAGCa--GCGCCG--GGCGc-GUGCUC- -5'
7929 3' -59.3 NC_001973.1 + 123163 0.66 0.810266
Target:  5'- cGAGGUCGgguccUCGUcGCCgGCGCGCu-- -3'
miRNA:   3'- aCUUCAGC-----AGCGcCGGgCGCGUGcuc -5'
7929 3' -59.3 NC_001973.1 + 140874 0.66 0.801695
Target:  5'- gGgcGUgCGcaucugCGCGGCgUCGCGCGCGAc -3'
miRNA:   3'- aCuuCA-GCa-----GCGCCG-GGCGCGUGCUc -5'
7929 3' -59.3 NC_001973.1 + 124303 0.66 0.801695
Target:  5'- --uGGUaCGUCgGCGGCaCGCGCuCGAGc -3'
miRNA:   3'- acuUCA-GCAG-CGCCGgGCGCGuGCUC- -5'
7929 3' -59.3 NC_001973.1 + 121295 0.66 0.801695
Target:  5'- gGccGUCGccCGCGGCgCGCGCcgGCGGa -3'
miRNA:   3'- aCuuCAGCa-GCGCCGgGCGCG--UGCUc -5'
7929 3' -59.3 NC_001973.1 + 94580 0.66 0.792981
Target:  5'- gGAGGUgagcccCGaCGCGG-UCGCGUACGAGc -3'
miRNA:   3'- aCUUCA------GCaGCGCCgGGCGCGUGCUC- -5'
7929 3' -59.3 NC_001973.1 + 51737 0.66 0.792981
Target:  5'- cGAGGgca-CGUGGgCCGUGUGCGAGg -3'
miRNA:   3'- aCUUCagcaGCGCCgGGCGCGUGCUC- -5'
7929 3' -59.3 NC_001973.1 + 122610 0.66 0.792981
Target:  5'- cGGAGgCGUCgGCGGCgCCGa-CGCGGGc -3'
miRNA:   3'- aCUUCaGCAG-CGCCG-GGCgcGUGCUC- -5'
7929 3' -59.3 NC_001973.1 + 110076 0.66 0.784131
Target:  5'- gGAGGaCG-CGCuGUUCGCGCGCGAc -3'
miRNA:   3'- aCUUCaGCaGCGcCGGGCGCGUGCUc -5'
7929 3' -59.3 NC_001973.1 + 31475 0.66 0.775153
Target:  5'- cGAAGcCGa--CGGUCUGCGCGCGAu -3'
miRNA:   3'- aCUUCaGCagcGCCGGGCGCGUGCUc -5'
7929 3' -59.3 NC_001973.1 + 108904 0.67 0.747532
Target:  5'- -cAGGUCGUCGCuuuuGGCgCGCGuCACGc- -3'
miRNA:   3'- acUUCAGCAGCG----CCGgGCGC-GUGCuc -5'
7929 3' -59.3 NC_001973.1 + 95679 0.67 0.747532
Target:  5'- cGccGUCGUgGCGGCCCG---ACGAGc -3'
miRNA:   3'- aCuuCAGCAgCGCCGGGCgcgUGCUC- -5'
7929 3' -59.3 NC_001973.1 + 34222 0.67 0.747532
Target:  5'- -cAGGUCGU-GCaGCUCGCGCGCGu- -3'
miRNA:   3'- acUUCAGCAgCGcCGGGCGCGUGCuc -5'
7929 3' -59.3 NC_001973.1 + 159108 0.67 0.747532
Target:  5'- cUGgcGUUG-CuCGGCCCGCGacugaGCGAGu -3'
miRNA:   3'- -ACuuCAGCaGcGCCGGGCGCg----UGCUC- -5'
7929 3' -59.3 NC_001973.1 + 77344 0.67 0.738124
Target:  5'- uUGGAGcCGcCGCGGCacaccgacgcggCCGCGCGCc-- -3'
miRNA:   3'- -ACUUCaGCaGCGCCG------------GGCGCGUGcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.