miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 38439 0.65 0.597421
Target:  5'- uGGCGcGCaCCGCGgccguuccguacuuGGCgGCGACGAg-- -3'
miRNA:   3'- -CCGC-CGcGGCGC--------------CCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 96771 0.66 0.590759
Target:  5'- gGGCGGCGUgGCGGccaaCGCGGCc---- -3'
miRNA:   3'- -CCGCCGCGgCGCCcg--GCGCUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 57200 0.66 0.590759
Target:  5'- -aCGGCGUUcagGgGGGCCGuCGACGAcGUc -3'
miRNA:   3'- ccGCCGCGG---CgCCCGGC-GCUGCUaCA- -5'
7933 5' -64.4 NC_001973.1 + 6117 0.66 0.589808
Target:  5'- cGGCgcgcgagGGCGCCGCGauacGCCGCcugGACGgcGg -3'
miRNA:   3'- -CCG-------CCGCGGCGCc---CGGCG---CUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 138631 0.66 0.581264
Target:  5'- cGGCuGCGCCagcGCGGGCgGC-ACGGg-- -3'
miRNA:   3'- -CCGcCGCGG---CGCCCGgCGcUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 88485 0.66 0.5718
Target:  5'- -aCGGUGCCGCcGG-CGCGGCGcgGc -3'
miRNA:   3'- ccGCCGCGGCGcCCgGCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 132225 0.66 0.5718
Target:  5'- uGGCGGCGCCGCGGuuuauaUGCacucucaGGUGUc -3'
miRNA:   3'- -CCGCCGCGGCGCCcg----GCGcug----CUACA- -5'
7933 5' -64.4 NC_001973.1 + 140874 0.66 0.5718
Target:  5'- gGGCGuGCGCaucugCGCGGcGUCGCGcGCGAc-- -3'
miRNA:   3'- -CCGC-CGCG-----GCGCC-CGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 152335 0.66 0.5718
Target:  5'- cGCGGUG-CGCGGGCgGgGcGCGAUa- -3'
miRNA:   3'- cCGCCGCgGCGCCCGgCgC-UGCUAca -5'
7933 5' -64.4 NC_001973.1 + 103913 0.66 0.562374
Target:  5'- cGCGGCGCgacgaggagCGCGucGUCGCGGCGcgGg -3'
miRNA:   3'- cCGCCGCG---------GCGCc-CGGCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 61101 0.66 0.561434
Target:  5'- cGCGGCcgacggagcagcgGCgGCGGGgCGCGGCGu--- -3'
miRNA:   3'- cCGCCG-------------CGgCGCCCgGCGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 29006 0.66 0.559555
Target:  5'- cGGCGGCugggcacagcacgcGUCGCGGuacGCCucgGCGACGAa-- -3'
miRNA:   3'- -CCGCCG--------------CGGCGCC---CGG---CGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 96582 0.66 0.543655
Target:  5'- cGCGGUgGCgGCGGcGCUGgCGACGAc-- -3'
miRNA:   3'- cCGCCG-CGgCGCC-CGGC-GCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 134796 0.66 0.543655
Target:  5'- uGCGGCcgucGgCGUGGuGCCGCGACaGAUa- -3'
miRNA:   3'- cCGCCG----CgGCGCC-CGGCGCUG-CUAca -5'
7933 5' -64.4 NC_001973.1 + 140039 0.66 0.543655
Target:  5'- gGGCuGCGCC-CGGGCgCuCGACGAg-- -3'
miRNA:   3'- -CCGcCGCGGcGCCCG-GcGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 89378 0.67 0.538078
Target:  5'- uGGUGGCGaacugauaaaaaucuCCGUGGGUuuggaGCGAcuCGAUGUg -3'
miRNA:   3'- -CCGCCGC---------------GGCGCCCGg----CGCU--GCUACA- -5'
7933 5' -64.4 NC_001973.1 + 121307 0.67 0.534371
Target:  5'- cGGCGcGCGCCgGCGGaCgCGCcGACGAg-- -3'
miRNA:   3'- -CCGC-CGCGG-CGCCcG-GCG-CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 36330 0.67 0.534371
Target:  5'- cGCGGCcgaCGCGGGCCuCGGCGu--- -3'
miRNA:   3'- cCGCCGcg-GCGCCCGGcGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 152435 0.67 0.534371
Target:  5'- gGGCGGCG-CGCaGGCuuaucgCGCGGCGGc-- -3'
miRNA:   3'- -CCGCCGCgGCGcCCG------GCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 39403 0.67 0.525144
Target:  5'- cGGCGcGCGCCagGUcGGCCGCGGUGAg-- -3'
miRNA:   3'- -CCGC-CGCGG--CGcCCGGCGCUGCUaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.