miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 104268 0.71 0.315275
Target:  5'- cGGCGGCGCCGCcgccGGGCUG-GuCG-UGUc -3'
miRNA:   3'- -CCGCCGCGGCG----CCCGGCgCuGCuACA- -5'
7933 5' -64.4 NC_001973.1 + 6506 0.71 0.322075
Target:  5'- cGGCugGGCGgCGCGGGCgUGCcGACGAUu- -3'
miRNA:   3'- -CCG--CCGCgGCGCCCG-GCG-CUGCUAca -5'
7933 5' -64.4 NC_001973.1 + 94411 0.71 0.322075
Target:  5'- cGCGGCGCCGCccGGaCCGgCGGCGuUGg -3'
miRNA:   3'- cCGCCGCGGCGc-CC-GGC-GCUGCuACa -5'
7933 5' -64.4 NC_001973.1 + 59925 0.7 0.365148
Target:  5'- cGC-GCGCCGCGGcGCCGCagcGCGAcGUg -3'
miRNA:   3'- cCGcCGCGGCGCC-CGGCGc--UGCUaCA- -5'
7933 5' -64.4 NC_001973.1 + 121237 0.7 0.364399
Target:  5'- cGGCGGCGCgGCgcgucgcagaacaGGGUgGCGACGc--- -3'
miRNA:   3'- -CCGCCGCGgCG-------------CCCGgCGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 122544 0.7 0.372703
Target:  5'- cGGCGGCGgCGCuGGUgGUGGUGGUGg -3'
miRNA:   3'- -CCGCCGCgGCGcCCGgCGCUGCUACa -5'
7933 5' -64.4 NC_001973.1 + 146091 0.7 0.343125
Target:  5'- gGGCGGgGaCUaagGuCGGGCCGCGGCGcUGa -3'
miRNA:   3'- -CCGCCgC-GG---C-GCCCGGCGCUGCuACa -5'
7933 5' -64.4 NC_001973.1 + 24168 0.7 0.372703
Target:  5'- uGGCGcUGCCGCuGcGGCCGCGGCGc--- -3'
miRNA:   3'- -CCGCcGCGGCG-C-CCGGCGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 126560 0.7 0.365148
Target:  5'- uGUGGCgcaGCCGCGGGuCCGCGggcuugGCGAUc- -3'
miRNA:   3'- cCGCCG---CGGCGCCC-GGCGC------UGCUAca -5'
7933 5' -64.4 NC_001973.1 + 27863 0.7 0.350358
Target:  5'- uGGCGGCcgcgGCCGCGGGCgCG-GGCGc--- -3'
miRNA:   3'- -CCGCCG----CGGCGCCCG-GCgCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 35088 0.7 0.328983
Target:  5'- aGCGGUacGCCGCGuGGCUGCGGCu---- -3'
miRNA:   3'- cCGCCG--CGGCGC-CCGGCGCUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 76991 0.7 0.340976
Target:  5'- aGCGGCGCCacgcugaucaccucGuCGGGCgGCGGCGGc-- -3'
miRNA:   3'- cCGCCGCGG--------------C-GCCCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 91557 0.7 0.328983
Target:  5'- cGGCGGCGUCGCacgcuuGUCGCGAUGAg-- -3'
miRNA:   3'- -CCGCCGCGGCGcc----CGGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 8608 0.7 0.342407
Target:  5'- cGGCGGCcgcGCCGCGGacgacGCCGCcgaggccGACGAg-- -3'
miRNA:   3'- -CCGCCG---CGGCGCC-----CGGCG-------CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 22815 0.7 0.343125
Target:  5'- cGGU-GCGCCGCGGGCUuccggaaGAUGGUGUu -3'
miRNA:   3'- -CCGcCGCGGCGCCCGGcg-----CUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 133304 0.69 0.388129
Target:  5'- cGGCGGCGCCGUcg--CGCGGCGAa-- -3'
miRNA:   3'- -CCGCCGCGGCGcccgGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 74004 0.69 0.388129
Target:  5'- aGGCGGUcuagcaauugGUCGCGGGCguCGCacuCGAUGUg -3'
miRNA:   3'- -CCGCCG----------CGGCGCCCG--GCGcu-GCUACA- -5'
7933 5' -64.4 NC_001973.1 + 152385 0.69 0.42021
Target:  5'- cGGcCGGCGCgGgCGGGCgCGgGGCGGc-- -3'
miRNA:   3'- -CC-GCCGCGgC-GCCCG-GCgCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 133453 0.69 0.42021
Target:  5'- aGuCGGCG-CGCGGGUCGCGcACGGa-- -3'
miRNA:   3'- cC-GCCGCgGCGCCCGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 14358 0.69 0.42021
Target:  5'- uGGuCGGCGUgguCGaCGGGgCGCGGCGAg-- -3'
miRNA:   3'- -CC-GCCGCG---GC-GCCCgGCGCUGCUaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.