miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 122666 0.8 0.076279
Target:  5'- cGCGGCGCCGuCGGGCCagaacgcGCGGCGAUc- -3'
miRNA:   3'- cCGCCGCGGC-GCCCGG-------CGCUGCUAca -5'
7933 5' -64.4 NC_001973.1 + 111074 0.78 0.102991
Target:  5'- cGCGGCGCCcgacGUGGGCCGCGuCGAg-- -3'
miRNA:   3'- cCGCCGCGG----CGCCCGGCGCuGCUaca -5'
7933 5' -64.4 NC_001973.1 + 135897 0.78 0.105556
Target:  5'- aGCGGCgGUCGCGGGCCG-GACGAUcGUc -3'
miRNA:   3'- cCGCCG-CGGCGCCCGGCgCUGCUA-CA- -5'
7933 5' -64.4 NC_001973.1 + 95085 0.78 0.110867
Target:  5'- aGGCGcugcaGCGCucgugCGCGGGCCGCGACGAc-- -3'
miRNA:   3'- -CCGC-----CGCG-----GCGCCCGGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 81815 0.75 0.159348
Target:  5'- -cCGGCGCCGCcGGCgGCGACGAg-- -3'
miRNA:   3'- ccGCCGCGGCGcCCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 50091 0.74 0.196963
Target:  5'- cGGCGGCGCCacggaGGGCgGCGGCGccGc -3'
miRNA:   3'- -CCGCCGCGGcg---CCCGgCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 104024 0.74 0.206313
Target:  5'- cGCGGCGCCaGCaaccuagccGGGCCGuCGACGAc-- -3'
miRNA:   3'- cCGCCGCGG-CG---------CCCGGC-GCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 53864 0.74 0.211131
Target:  5'- cGGCGGCGCCGcCGaGcGCgGCGGCcGUGg -3'
miRNA:   3'- -CCGCCGCGGC-GC-C-CGgCGCUGcUACa -5'
7933 5' -64.4 NC_001973.1 + 122619 0.73 0.216045
Target:  5'- cGGCGGCGCCgacGCGGGCgC-CGGCGucgGUc -3'
miRNA:   3'- -CCGCCGCGG---CGCCCG-GcGCUGCua-CA- -5'
7933 5' -64.4 NC_001973.1 + 132543 0.73 0.221057
Target:  5'- gGGCGcG-GCgGCGGGCucgagCGCGGCGGUGUg -3'
miRNA:   3'- -CCGC-CgCGgCGCCCG-----GCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 31346 0.73 0.221057
Target:  5'- uGGCGcccGCGCucugCGUGGucGCCGCGGCGGUGUg -3'
miRNA:   3'- -CCGC---CGCG----GCGCC--CGGCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 83730 0.73 0.221057
Target:  5'- aGCGGCGCCGCGu-CCGCGACuuggaGGUGg -3'
miRNA:   3'- cCGCCGCGGCGCccGGCGCUG-----CUACa -5'
7933 5' -64.4 NC_001973.1 + 38339 0.73 0.236688
Target:  5'- uGGCGGCgucaguGCCGCcGGCgGCGGCGAc-- -3'
miRNA:   3'- -CCGCCG------CGGCGcCCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 55229 0.73 0.236688
Target:  5'- aGGCGGCgGCgGCGGGCgGCGA-GAg-- -3'
miRNA:   3'- -CCGCCG-CGgCGCCCGgCGCUgCUaca -5'
7933 5' -64.4 NC_001973.1 + 8201 0.72 0.2642
Target:  5'- cGGCaccgcuuGGCGCCGCuGGGCCGCcaagccGCGAgagGUg -3'
miRNA:   3'- -CCG-------CCGCGGCG-CCCGGCGc-----UGCUa--CA- -5'
7933 5' -64.4 NC_001973.1 + 81036 0.72 0.264788
Target:  5'- cGGCGGUa-UGCGGGCCGCGuCGAc-- -3'
miRNA:   3'- -CCGCCGcgGCGCCCGGCGCuGCUaca -5'
7933 5' -64.4 NC_001973.1 + 35686 0.72 0.276764
Target:  5'- cGGCGGCGCgGUGgcGGCgaugCGCGACGAg-- -3'
miRNA:   3'- -CCGCCGCGgCGC--CCG----GCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 45851 0.71 0.3066
Target:  5'- gGGCcugGGCGUCGCGggcgcgcgcuccucGGCCGCGGCGcUGc -3'
miRNA:   3'- -CCG---CCGCGGCGC--------------CCGGCGCUGCuACa -5'
7933 5' -64.4 NC_001973.1 + 55430 0.71 0.308585
Target:  5'- cGGCGGCG--GCGGGCC-CGACGGc-- -3'
miRNA:   3'- -CCGCCGCggCGCCCGGcGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 28949 0.71 0.314602
Target:  5'- gGGCGGCagcggggGCCGgcaguCGGGCgGCGACGcguUGUa -3'
miRNA:   3'- -CCGCCG-------CGGC-----GCCCGgCGCUGCu--ACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.